FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ECOL5 (Phosphoglycerate kinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=pgk PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 81/180 (45.00%), Postives = 117/180 (65.00%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L + L   V++  D +         ++ EG +++LENVRF+K E+K+D   +KK A+L D++V DAFG+AHRA AST G+ KF   + AG L+  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ECOK1 (Phosphoglycerate kinase OS=Escherichia coli O1:K1 / APEC GN=pgk PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 81/180 (45.00%), Postives = 117/180 (65.00%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L + L   V++  D +         ++ EG +++LENVRF+K E+K+D   +KK A+L D++V DAFG+AHRA AST G+ KF   + AG L+  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ECOHS (Phosphoglycerate kinase OS=Escherichia coli O9:H4 (strain HS) GN=pgk PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 81/180 (45.00%), Postives = 117/180 (65.00%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L + L   V++  D +         ++ EG +++LENVRF+K E+K+D   +KK A+L D++V DAFG+AHRA AST G+ KF   + AG L+  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ECO24 (Phosphoglycerate kinase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=pgk PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 81/180 (45.00%), Postives = 117/180 (65.00%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L + L   V++  D +         ++ EG +++LENVRF+K E+K+D   +KK A+L D++V DAFG+AHRA AST G+ KF   + AG L+  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SODGM (Phosphoglycerate kinase OS=Sodalis glossinidius (strain morsitans) GN=pgk PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.176e-34
Identity = 81/180 (45.00%), Postives = 118/180 (65.56%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            +V  + + DL GKRVF+R DLNVP+ D   +T D R+RA++PTI+  +  GA+V+++SHLGRP       ++SL+P+V  L   L   V++A D +         ++ EG +++LENVRF+K E+K+D   AKK A+L D++V DAFG+AHRA AST GV KF   + AG L+  EL+ L
Sbjct:    2 AVIKMTDLDLAGKRVFIRSDLNVPVKDG-KVTSDARIRASLPTIEDSLKQGARVMVTSHLGRPTEGEYNAEFSLQPVVDYLENKLSAPVRLAKDYLDG------VDVAEGELVVLENVRFNKGEKKDDEALAKKYAALCDVFVMDAFGTAHRAQASTHGVGKFAAVACAGPLLFNELEAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PSEFS (Phosphoglycerate kinase OS=Pseudomonas fluorescens (strain SBW25) GN=pgk PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.176e-34
Identity = 84/181 (46.41%), Postives = 119/181 (65.75%), Query Frame = 3
Query:  117 VSVLK--EADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            ++VLK  + DL+GKRV +R DLNVP+ D + +T D R+ A++PTIK  +  GA V++ SHLGRP     + + SLKP+   LS+ LG +V +  D +G        ++  G ++L ENVRF+K E+KN  E A++ A+L D++V DAFG+AHRA  ST GVAKF K + AG L+  ELD L
Sbjct:    1 MTVLKMTDLDLQGKRVLIREDLNVPVKDGV-VTSDARILASLPTIKLALEKGAAVMVCSHLGRPTEGEFSAENSLKPVAEYLSKALGRDVPLVADYLGG------VDVKAGDIVLFENVRFNKGEKKNSDELAQQYAALCDVFVMDAFGTAHRAEGSTHGVAKFAKVAAAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PROMH (Phosphoglycerate kinase OS=Proteus mirabilis (strain HI4320) GN=pgk PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.176e-34
Identity = 82/180 (45.56%), Postives = 117/180 (65.00%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRV +R DLNVP+ D   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SLKP+V  L E L   V +A D +         ++  G +++LENVRF+K E+K+D   +K+ A+L D++V DAFG+AHRA AST GVAKF   + AG L+  EL+ L
Sbjct:    2 SVIKMTDLDLAGKRVLIRADLNVPVKDG-KVTSDARIRASLPTIEAALKQGAKVMVTSHLGRPTEGEYNEEFSLKPVVDYLKEKLSAPVSLAKDYLNG------VDVNAGELVVLENVRFNKGEKKDDETLSKQYAALCDVFVMDAFGTAHRAQASTHGVAKFADIACAGPLLSAELEAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGKC_TRYBB (Phosphoglycerate kinase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.176e-34
Identity = 88/200 (44.00%), Postives = 120/200 (60.00%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-----------------PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEE----EKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDY 644
            KKS++   E DLKGK+V +RVD NVP+  N  IT+D R+R+A+PT+K ++  G   +L SHLGRPKG+                   K +LKP+   LSELL   V  A DC+      +V+++  G V+LLENVRF+KEE     K+    AK LAS  D+Y++DAFG+AHR  A+  G+ K L    AG+LM KE+ Y
Sbjct:    6 KKSIN---ECDLKGKKVLIRVDFNVPVK-NGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKALSELLLRPVTFAPDCLN--AADVVSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISY 199          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGKB_CRIFA (Phosphoglycerate kinase, cytosolic OS=Crithidia fasciculata GN=PGKB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.176e-34
Identity = 89/202 (44.06%), Postives = 124/202 (61.39%), Query Frame = 3
Query:   93 IKMAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT---PK-----------YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEE----EKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDY 644
            + +A KK++    +A +KGK+V +RVD NVP+  N  IT+D R+R+A+PTI+ ++  G   IL SHLGRPKG     PK            +L+P+  RLSELLG +V+ A DC+  +     A++  G VLLLENVRF+ EE    E+     AK LA+  D+YV+DAFG+AHR  A   G+ K L    AG+LM KE++Y
Sbjct:    1 MSLAPKKTID---DAVVKGKKVLIRVDFNVPVK-NGEITNDFRIRSALPTIQKVLKEGGSCILMSHLGRPKGAKMSDPKPAKSVRGYEEAATLRPVAARLSELLGQKVEFAPDCL--DAASYAAKLKGGDVLLLENVRFYAEEGSKKEEERDAMAKVLAAYGDVYVSDAFGTAHRDSADMTGIPKVLGAGYAGYLMEKEINY 196          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_YERE8 (Phosphoglycerate kinase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=pgk PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.842e-34
Identity = 83/180 (46.11%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRV +R DLNVP+ D   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L + L   V++A D +         EI  G +++LENVRF+K E+K+D   +KK A+L D+YV DAFG+AHRA AST GV KF   + AG L+  EL+ L
Sbjct:    2 SVIKMTDLDLAGKRVLIRADLNVPVKDG-KVTSDARIRASLPTIETALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSAPVRLAKDYLDG------VEIAAGELVVLENVRFNKGEKKDDETLSKKYAALCDVYVMDAFGTAHRAQASTHGVGKFAPIACAGPLLSAELEAL 174          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_ECOL51.666e-3445.00Phosphoglycerate kinase OS=Escherichia coli O6:K15... [more]
PGK_ECOK11.666e-3445.00Phosphoglycerate kinase OS=Escherichia coli O1:K1 ... [more]
PGK_ECOHS1.666e-3445.00Phosphoglycerate kinase OS=Escherichia coli O9:H4 ... [more]
PGK_ECO241.666e-3445.00Phosphoglycerate kinase OS=Escherichia coli O139:H... [more]
PGK_SODGM2.176e-3445.00Phosphoglycerate kinase OS=Sodalis glossinidius (s... [more]
PGK_PSEFS2.176e-3446.41Phosphoglycerate kinase OS=Pseudomonas fluorescens... [more]
PGK_PROMH2.176e-3445.56Phosphoglycerate kinase OS=Proteus mirabilis (stra... [more]
PGKC_TRYBB2.176e-3444.00Phosphoglycerate kinase, glycosomal OS=Trypanosoma... [more]
PGKB_CRIFA2.176e-3444.06Phosphoglycerate kinase, cytosolic OS=Crithidia fa... [more]
PGK_YERE82.842e-3446.11Phosphoglycerate kinase OS=Yersinia enterocolitica... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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