FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_VESOH (Phosphoglycerate kinase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=pgk PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.842e-34
Identity = 82/180 (45.56%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  L + DL  KRV +R DLNVP+ + + +T D R++A++PTIK  +  GAKV+L SH GRP    P   +SL+P+  RLSELL   V++  D +         E+  G V+L ENVRF+  E  ND E +K++A++ D++V DAFG+AHRA AST GVAK+   + +G L+ +ELD L
Sbjct:    2 SVINLSDLDLNSKRVLIRQDLNVPISNGV-VTSDKRIKASLPTIKMALNQGAKVMLMSHRGRPIEGDPSDGFSLQPVADRLSELLNTTVRLEKDWLDG------VEMNNGKVVLCENVRFNVGEMVNDDELSKRMAAICDIFVMDAFGTAHRAQASTYGVAKYAPIACSGPLLSEELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_OXYNO (Phosphoglycerate kinase OS=Oxytricha nova GN=PGK PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.842e-34
Identity = 85/184 (46.20%), Postives = 115/184 (62.50%), Query Frame = 3
Query:  141 LKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE-------------KND-PEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDY 644
            +KGKRV +RVD NVP+ +   I D  R++ A+P+I Y + +GA+ V+L SHLGRP G    K+SLKP++P + +LL  +V+  +DC+G EVE+      +G V+LLEN+RFH  EE             K D   F K L SL +LYVND FG+AHRAH+S  GV   +    AGFL+ KEL Y
Sbjct:   15 IKGKRVLMRVDFNVPIKEG-KIKDLTRIQGALPSINYCLENGAESVVLMSHLGRPDGQRVEKHSLKPVLPAIEDLLKKKVQFLDDCVGSEVERECKSASKGKVILLENLRFHLAEEGKGVINGEKVKATKEDIAAFRKSLTSLGELYVNDGFGTAHRAHSSMVGVN--VDTRAAGFLLKKELQY 195          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ONYPE (Phosphoglycerate kinase OS=Onion yellows phytoplasma GN=pgk PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.842e-34
Identity = 77/180 (42.78%), Postives = 117/180 (65.00%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            L   ++  K+V +R DLNVPL++++ ITDDNR++A +PT+KYL+   AKVI+ SHLGR K    K  +SL+ +  +++  L  ++K   +  G  + + V ++  G VL+++N RF     K+E KNDPE  K  ASL D++VNDAFG+ HR HAS  G+A ++K    GFL+ KE+ +L
Sbjct:    5 LTNMNITNKKVLLRADLNVPLENSV-ITDDNRIKAILPTLKYLVQQKAKVIIFSHLGRVKTEADKAHFSLQVVAEKIAFYLQQKLKFVPETQGNTLNQAVGQMLPGDVLVVQNTRFEDVPFKKESKNDPELGKYWASLGDVFVNDAFGTCHRTHASNVGIATYIKEKCFGFLVEKEISFL 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ECO57 (Phosphoglycerate kinase OS=Escherichia coli O157:H7 GN=pgk PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.842e-34
Identity = 81/180 (45.00%), Postives = 117/180 (65.00%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L + L   V++  D +         ++ EG +++LENVRF+K E+K+D   +KK A+L D++V DAFG+AHRA AST G+ KF   + AG L+  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVRFNKGEKKDDEILSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGKC_CRIFA (Phosphoglycerate kinase, glycosomal OS=Crithidia fasciculata GN=PGKC PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.842e-34
Identity = 89/202 (44.06%), Postives = 123/202 (60.89%), Query Frame = 3
Query:   93 IKMAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT---PK-----------YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEE----EKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDY 644
            + +  KKS+    +A +KGK+V +RVD NVP+  N  IT+D R+R+A+PTI+ ++  G   IL SHLGRPKG     PK            +L+P+  RLSELLG +V+ A DC+  +     A++  G VLLLENVRF+ EE    E+     AK LA+  D+YV+DAFG+AHR  A   G+ K L    AG+LM KE++Y
Sbjct:    1 MSLVPKKSID---DAVVKGKKVLIRVDFNVPVK-NGEITNDFRIRSALPTIQKVLKEGGSCILMSHLGRPKGAKMSDPKPAKSVRGYEEAATLRPVAARLSELLGQKVEFAPDCL--DAASYAAKLKGGDVLLLENVRFYAEEGSKKEEERDAMAKVLAAYGDVYVSDAFGTAHRDSADMTGIPKVLGAGYAGYLMEKEINY 196          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PSEPW (Phosphoglycerate kinase OS=Pseudomonas putida (strain W619) GN=pgk PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.712e-34
Identity = 86/181 (47.51%), Postives = 118/181 (65.19%), Query Frame = 3
Query:  117 VSVLK--EADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            ++VLK  + DL+GKRV +R DLNVP+ D + +T D R+ AA+PTIK  +  GA V++ SHLGRP     + + SLKP+   LS+ LG +V +  D +         E+  G ++L ENVRF+K E+KN  E A+K A+L D++V DAFG+AHRA  ST GVAKF K + AG L+  ELD L
Sbjct:    1 MTVLKMTDLDLQGKRVLIREDLNVPVKDGV-VTSDARILAALPTIKLALEKGAAVMVCSHLGRPTEGEFSAENSLKPVADYLSKALGRDVALVADYLDG------IEVKAGDLVLFENVRFNKGEKKNADELAQKYAALCDVFVMDAFGTAHRAEGSTHGVAKFAKVAAAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_NOCFA (Phosphoglycerate kinase OS=Nocardia farcinica GN=pgk PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.712e-34
Identity = 88/191 (46.07%), Postives = 120/191 (62.83%), Query Frame = 3
Query:   99 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH-KEEEKNDPEFAKKLASLADL------YVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            MA K    +L E  ++G+ V VR DLNVPLDDN  ITD  R+ A++PT+K L+  GAKV++++HLGRPKG   PK+SL P+  +L+ELLG  V++A D +G +       + +G VLLLENVRF  +E  K++ E  K  A+L +L      +V+D FG  HR  AS   VAK L P  AG L+  E+D L
Sbjct:    1 MAVKTLQDLLNEG-VEGRGVLVRSDLNVPLDDNGQITDPGRIIASIPTLKALVEAGAKVVVTAHLGRPKGEPDPKFSLAPVAAKLAELLGRNVQLAGDVVGYDALSRSEGLTDGDVLLLENVRFDPRETSKDEAERGKLAAALVELVGEDGAFVSDGFGVVHRKQASVYDVAKLL-PHYAGTLVAAEVDVL 189          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_KLEP3 (Phosphoglycerate kinase OS=Klebsiella pneumoniae (strain 342) GN=pgk PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.712e-34
Identity = 81/180 (45.00%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L + L   V++  D +         E+  G +++LENVRF+K E+K+D   +KK A+L D++V DAFG+AHRA AST G+ KF   + AG L+  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VEVAAGELVVLENVRFNKGEKKDDEALSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_HALHL (Phosphoglycerate kinase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=pgk PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.712e-34
Identity = 80/176 (45.45%), Postives = 111/176 (63.07%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + + DL GKRV +R DLNVP+ D   + DD RVRAA  +I+  M  G +V++ SHLGRPK      + S+ P+  RL E+LG EV +  D +         ++PEGGV L ENVRF   E K+D   ++++A+L D++V DAFG+AHRA AST GVA+F   + AG L+  EL+ L
Sbjct:    6 MTDLDLTGKRVLIREDLNVPIKDG-QVADDTRVRAAAESIRQAMQAGGRVLVMSHLGRPKEGEYDAEASMAPVARRLGEILGCEVPVVRDWLEG------VDVPEGGVALAENVRFQPGETKDDEALSRRMAALCDVFVMDAFGTAHRAQASTHGVARFAPEACAGPLLSAELEAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SALTY (Phosphoglycerate kinase OS=Salmonella typhimurium GN=pgk PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.848e-34
Identity = 80/180 (44.44%), Postives = 117/180 (65.00%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRVF+R DLNVP+ +   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L + L   V++  D +         ++ EG +++LENVRF+K E+K+D   +KK A+L D++V DAFG+AHRA AST G+ KF   + AG L+  ELD L
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKEG-KVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVRFNKGEKKDDEALSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDAL 174          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_VESOH2.842e-3445.56Phosphoglycerate kinase OS=Vesicomyosocius okutani... [more]
PGK_OXYNO2.842e-3446.20Phosphoglycerate kinase OS=Oxytricha nova GN=PGK P... [more]
PGK_ONYPE2.842e-3442.78Phosphoglycerate kinase OS=Onion yellows phytoplas... [more]
PGK_ECO572.842e-3445.00Phosphoglycerate kinase OS=Escherichia coli O157:H... [more]
PGKC_CRIFA2.842e-3444.06Phosphoglycerate kinase, glycosomal OS=Crithidia f... [more]
PGK_PSEPW3.712e-3447.51Phosphoglycerate kinase OS=Pseudomonas putida (str... [more]
PGK_NOCFA3.712e-3446.07Phosphoglycerate kinase OS=Nocardia farcinica GN=p... [more]
PGK_KLEP33.712e-3445.00Phosphoglycerate kinase OS=Klebsiella pneumoniae (... [more]
PGK_HALHL3.712e-3445.45Phosphoglycerate kinase OS=Halorhodospira halophil... [more]
PGK_SALTY4.848e-3444.44Phosphoglycerate kinase OS=Salmonella typhimurium ... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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