FC920406

Overview
NameFC920406
Unique NameFC920406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15182 contig Ccv1_Contig15182:23..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920406 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.934e-31
Identity = 73/201 (36.32%), Postives = 112/201 (55.72%), Query Frame = 1
Query:  103 TETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKSCEXVDENTI 699
            ++ +    L   F S      IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+  +G  T+GSSEA ML G+A K  W+++ ++ G      KPN+V  +  QVCWEKF  Y+            +  +N  +  + VDE TI
Sbjct:    4 SKENKESYLEPVFGSSAEDRDIPKYTLGKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKEHMQLNTDQVLDYVDEYTI 202          
BLAST of FC920406 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.613e-28
Identity = 67/180 (37.22%), Postives = 104/180 (57.78%), Query Frame = 1
Query:  166 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKSCEXVDENTI 699
            +P  +M   S+    AYQ++ D+L+ +G+ R NLA+F  T+MEPE ++++  ++ KN +D  EYP T +L++ CVNM+A L+N  V + +  +G  TVGSSEA ML G+A K +W+    + G      KP++V  +  QVCWEKF  Y+            +  +N     + VDE TI
Sbjct:   23 LPEKRMNKESVDPRIAYQLVKDQLIDEGSARQNLATFCQTYMEPEAEQIMAETMEKNAIDKSEYPQTAKLESSCVNMLADLWN--VDESEHYMGTSTVGSSEACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTI 200          
The following BLAST results are available for this feature:
BLAST of FC920406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEB_LISMO1.934e-3136.32Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCEA_LISMO2.613e-2837.22Glutamate decarboxylase alpha OS=Listeria monocyto... [more]

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Properties
Property NameValue
Genbank descriptionC32007H06EF RVDevelop1 Citrus clementina cDNA clone C32007H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920406 ID=FC920406; Name=FC920406; organism=Citrus clementina; type=EST; length=699bp
GGCTCTCTTTCCTTTGTGTCTCAACAATTTCTATTCATTTCTCTCAGACT
CAAGAGCCTCTCTTCTCTGCAAAAAACAAAAACAAAAATGGTGATTTCAA
CAACAGAAACAGACTCCAGGGAGATTTTGAGCTCCACATTTGCTTCAAGA
TATGTCCGTGCTGCTATTCCCAGATTCAAGATGCCAGATAATTCAATGCC
AAAGGAGGCAGCCTATCAGGTAATAAATGATGAGCTGATGTTAGATGGAA
ATCCAAGGCTGAACTTGGCATCTTTTGTGACCACTTGGATGGAGCCCGAG
TGTGATAAGCTTGTCATGGCTTCGATTAATAAAAACTATGTTGACATGGA
TGAATACCCTGTAACCACAGAGCTCCAGAATCGGTGTGTGAATATGATTG
CCCACCTATTTAATACTCCAGTTGCGGATGACAAGACTGCAGTGGGCGTG
GGGACTGTAGGTTCATCAGAGGCAATAATGCTTGCTGGCTTGGCTTTTAA
AAGGAAGTGGCAGCAGAAGAGAAAAGAGCAAGGCAAACCCTATGATAAGC
CCAATATAGTCACTGGAGCTAATGTGCAGGTATGCTGGGAGAAATTTGCG
AGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAACTGGAAGAGGGATATTA
TGTGATGAATCCTGTGAAAAGCTGTGAGNTGGTAGATGAGAACACCATT
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