FC920407

Overview
NameFC920407
Unique NameFC920407
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8317 contig Ccv1_Contig8317:4..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DOA_DROME (Serine/threonine-protein kinase Doa OS=Drosophila melanogaster GN=Doa PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.748e-26
Identity = 52/117 (44.44%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  325 PRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            P   DD +GH +++ G+ L  RYKI++ +GEGTFGRV++  D +    +A+K+++++ KYR+AA +EI+ L+ +A+ D      CV++ +WFDY  H+CIVFE LG S+F+FL+ NN
Sbjct:  457 PVIQDDADGHLIYHTGDILHHRYKIMATLGEGTFGRVVKVKDMERDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMIDWFDYHGHMCIVFEMLGLSVFDFLRENN 573          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: CLK1_MOUSE (Dual specificity protein kinase CLK1 OS=Mus musculus GN=Clk1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.133e-25
Identity = 53/115 (46.09%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  334 DDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQ-ERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            +DD EGH +   G+ L+ RY+I+  +GEG FG+V+EC D +    RVA+K+V+++ +Y +AA  EI VL+HL   D   +  CVQ+  WF++R HICIVFE LG S ++F+K N+
Sbjct:  141 EDDEEGHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKVGGRRVAVKIVKNVDRYCEAAQSEIQVLEHLNTTDPHSTFRCVQMLEWFEHRGHICIVFELLGLSTYDFIKENS 255          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: CLKA_DICDI (Probable serine/threonine-protein kinase clkA OS=Dictyostelium discoideum GN=clkA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.524e-25
Identity = 52/115 (45.22%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGS---SHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            DD   +Y   +GE L  RYK+L  +G GTF  V+ECWD  +  +VAIK+VRS +KY + A++EID+L++L K         SHC+++ + F +++HIC+VF++ G SL+EFLK+N
Sbjct:  572 DDENDYYKVQVGEYLNNRYKVLCTVGSGTFSTVVECWDTNSSGQVAIKIVRSAKKYTEDALVEIDILRNLEKTGNSNGKYLSHCIRLLDSFLFKDHICLVFKRYGLSLYEFLKKN 686          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: CLK4_MOUSE (Dual specificity protein kinase CLK4 OS=Mus musculus GN=Clk4 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.623e-25
Identity = 52/115 (45.22%), Postives = 75/115 (65.22%), Query Frame = 1
Query:  334 DDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQE-RVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            +DD EGH +   G+ L  RY+I+  +GEG FG+V+EC D       VA+K+V+++ +YR+AA  EI VL+HL   D      CVQ+  WFD+  H+CIVFE LG S ++F+K N+
Sbjct:  140 EDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGLHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLSTYDFIKENS 254          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: CLK4_HUMAN (Dual specificity protein kinase CLK4 OS=Homo sapiens GN=CLK4 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.623e-25
Identity = 52/115 (45.22%), Postives = 75/115 (65.22%), Query Frame = 1
Query:  334 DDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQE-RVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            +DD EGH +   G+ L  RY+I+  +GEG FG+V+EC D       VA+K+V+++ +YR+AA  EI VL+HL   D      CVQ+  WFD+  H+CIVFE LG S ++F+K N+
Sbjct:  140 EDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGMHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLSTYDFIKENS 254          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: CLK1_HUMAN (Dual specificity protein kinase CLK1 OS=Homo sapiens GN=CLK1 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.344e-25
Identity = 52/114 (45.61%), Postives = 77/114 (67.54%), Query Frame = 1
Query:  334 DDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQER-VAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            +DD EGH +   G+ L+ RY+I+  +GEG FG+V+EC D +   R VA+K+V+++ +Y +AA  EI VL+HL   D   +  CVQ+  WF++  HICIVFE LG S ++F+K N
Sbjct:  142 EDDEEGHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLSTYDFIKEN 255          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYRK4_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Homo sapiens GN=DYRK4 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21
Identity = 43/113 (38.05%), Postives = 77/113 (68.14%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            DD  G Y+  L +++  RY++L  +G+G+FG+V +C D +  E VA+K++R+ +++   A++E+ +L+ L K DK  + + V ++++F +RNH CI FE LG +L+E +K NN
Sbjct:   86 DDEHGFYLKVLHDHIAYRYEVLETIGKGSFGQVAKCLDHKNNELVALKIIRNKKRFHQQALMELKILEALRKKDKDNTYNVVHMKDFFYFRNHFCITFELLGINLYELMKNNN 198          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYRK4_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Mus musculus GN=Dyrk4 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.403e-21
Identity = 41/113 (36.28%), Postives = 78/113 (69.03%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            DD  G Y+  L +++  RY++L  +G+G+FG+V +C D +  E VA+K++R+ +++   A++E+ +L+ L + DK  + + V ++++F +RNH+CI FE LG +L+E +K N+
Sbjct:  201 DDEHGSYMKVLHDHIAYRYEVLEMIGKGSFGQVAKCLDHKNNELVALKIIRNKKRFHHQALVELKILEALRRKDKDNNHNVVHMKDFFYFRNHLCITFELLGINLYELMKNNS 313          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: KNS1_YEAST (Dual specificity protein kinase KNS1 OS=Saccharomyces cerevisiae GN=KNS1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 44/114 (38.60%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  340 DREGHYVFNLGENLTP--RYKILSKMGEGTFGRVLECWDRQTQER-VAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            D++GHYV+   +      R+ +   +G+GTFG+VL+C D + +   VA+KV+R++ +YR+AA  E+ +LQ +  ND  G   C+ +R  FDY+NHIC+V +  G S+++F+  N
Sbjct:  294 DKDGHYVYQENDIFGSGGRFVVKDLLGQGTFGKVLKCIDNKYEPNYVAVKVIRAVDRYREAAKTELRILQTILNNDPQGQFQCLLLRECFDYKNHICLVTDLYGRSIYDFMCSN 407          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYRK3_DROME (Putative dual specificity tyrosine-phosphorylation-regulated kinase 3 homolog OS=Drosophila melanogaster GN=Dyrk3 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 45/130 (34.62%), Postives = 81/130 (62.31%), Query Frame = 1
Query:  289 GATAAAAKHVSPPRRD--DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            GA A     V  P     D+ +G Y+    +++  RY++L  +G+G+FG+V++ +D +T E VA+K+VR+ +++   A  EI +L HL ++DK  + + + + ++F +RNH CI FE L  +L+E +K+N
Sbjct:  240 GANAKKRPGVYGPNNSEYDNEQGAYIHVPHDHVAYRYEMLKIIGKGSFGQVIKAYDHKTHEHVALKIVRNEKRFHRQAQEEIRILHHLRRHDKYNTMNIIHMFDYFTFRNHTCITFELLSINLYELIKKN 369          
The following BLAST results are available for this feature:
BLAST of FC920407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
DOA_DROME1.748e-2644.44Serine/threonine-protein kinase Doa OS=Drosophila ... [more]
CLK1_MOUSE1.133e-2546.09Dual specificity protein kinase CLK1 OS=Mus muscul... [more]
CLKA_DICDI2.524e-2545.22Probable serine/threonine-protein kinase clkA OS=D... [more]
CLK4_MOUSE5.623e-2545.22Dual specificity protein kinase CLK4 OS=Mus muscul... [more]
CLK4_HUMAN5.623e-2545.22Dual specificity protein kinase CLK4 OS=Homo sapie... [more]
CLK1_HUMAN7.344e-2545.61Dual specificity protein kinase CLK1 OS=Homo sapie... [more]
DYRK4_HUMAN2.888e-2138.05Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK4_MOUSE8.403e-2136.28Dual specificity tyrosine-phosphorylation-regulate... [more]
KNS1_YEAST2.070e-1938.60Dual specificity protein kinase KNS1 OS=Saccharomy... [more]
DYRK3_DROME6.022e-1934.62Putative dual specificity tyrosine-phosphorylation... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007H08EF RVDevelop1 Citrus clementina cDNA clone C32007H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920407 ID=FC920407; Name=FC920407; organism=Citrus clementina; type=EST; length=677bp
ATCGTCACATTCGCCCAAAATATTCCCCCAATGCATAGGAACCCTAATTT
CCGAATGCTACCGTCATATCATCTCTCGCACTCTTATAATTCTGTTCGAA
TTTTCTACTAATATTCAAAACTATTGAGGAGTTTTGTGCTGCAGATACTT
AGGTTAAAAATCATACAAAGGAATAATAAATAGCAAACGATGATGGAGCA
GGAGCGAACCACTAAACGACGTCGGCTCGCTTGGGACGTGGCGCCATCGG
AGGCAGAGGCGCAACGGGCTCTGGTGGTGGGCCATGAAGGGGCTACGGCG
GCGGCTGCAAAACACGTGTCGCCGCCGAGAAGGGACGATGATCGTGAGGG
ACATTACGTTTTTAATCTCGGCGAAAATCTCACCCCCAGATATAAAATAC
TTAGCAAAATGGGTGAAGGCACATTTGGCCGTGTTTTGGAATGTTGGGAC
CGTCAAACACAGGAGCGTGTGGCAATCAAGGTAGTCAGAAGTATACGCAA
GTACCGTGATGCTGCAATGATTGAAATCGATGTTCTTCAGCATCTTGCTA
AAAATGACAAAGGCGGCAGCTCACATTGTGTGCAGATTCGAAATTGGTTT
GATTATCGCAATCATATTTGTATTGTGTTTGAGAAGCTTGGACCAAGTTT
ATTTGAATTTCTAAAGAGAAATAATAC
back to top