FC920407

Overview
NameFC920407
Unique NameFC920407
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8317 contig Ccv1_Contig8317:4..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYRK2_DROME (Dual specificity tyrosine-phosphorylation-regulated kinase 2 OS=Drosophila melanogaster GN=smi35A PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17
Identity = 38/113 (33.63%), Postives = 74/113 (65.49%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            DD  G+Y     +++  RY+IL  +G+G+FG+V+   D +T   VAIK++R+ +++ + A++E+++L  L + D  GS + + + ++  +R H+CI FE +  +L+E +K+NN
Sbjct:  180 DDDNGNYKIIEHDHIAFRYEILEVIGKGSFGQVIRALDHKTNTHVAIKIIRNKKRFLNQAVVELNILDELREKDADGSHNVIHMLDYTYFRKHLCITFELMSLNLYELIKKNN 292          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: PRP4B_DICDI (Serine/threonine-protein kinase prpf4B OS=Dictyostelium discoideum GN=prpf4B PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.304e-17
Identity = 41/113 (36.28%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGS--SHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKR 669
            DD +G+Y F +GE +  +Y+I S +G G F  V+   + +T E V IK++R+      + + EI++LQ ++      +  SHC+Q+++ F+YRNH+CIVFE +  SL + +K+
Sbjct:  473 DDADGYYKFRVGE-IMDKYQIFSPIGSGVFSTVVSAKETKTNEDVVIKIIRNRPSMHRSGLKEIEILQKISNTPTSSNQKSHCIQMKDHFNYRNHLCIVFEPMSMSLHQLIKK 584          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYR1B_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 1B OS=Mus musculus GN=Dyrk1b PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 7.361e-17
Identity = 46/154 (29.87%), Postives = 86/154 (55.84%), Query Frame = 1
Query:  214 KRRRLAWDVAPSEAEAQRALVVGHEGATAAAAKHVSPPRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            K++R A    P ++  ++   V + G               DD    Y+   GE    RY+I S +G+G+FG+V++ +D QTQE VAIK++++ + + + A IE+ +L+ + ++D     + V ++  F +RNH+C+VFE L  +L++ L+  +
Sbjct:   66 KKKRRAQQAPPQDSSTKKEKKVLNHGY--------------DDDNHDYIVRSGERWLERYEIDSLIGKGSFGQVVKAYDHQTQELVAIKIIKNKKAFLNQAQIELRLLELMNQHDTEMKYYIVHLKRHFMFRNHLCLVFELLSYNLYDLLRNTH 205          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYR1A_XENTR (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Xenopus tropicalis GN=dyrk1a PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.361e-17
Identity = 41/113 (36.28%), Postives = 72/113 (63.72%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            DD    Y+   GE    RY+I S +G+G+FG+V++ +DR  QE VAIK++++ + + + A IE+ +L+ + K+D     + V ++  F +RNH+C+VFE L  +L++ L+  N
Sbjct:  133 DDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRAEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTN 245          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYR1B_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 1B OS=Homo sapiens GN=DYRK1B PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 40/113 (35.40%), Postives = 73/113 (64.60%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            DD    Y+   GE    RY+I S +G+G+FG+V++ +D QTQE VAIK++++ + + + A IE+ +L+ + ++D     + V ++  F +RNH+C+VFE L  +L++ L+  +
Sbjct:   93 DDDNHDYIVRSGERWLERYEIDSLIGKGSFGQVVKAYDHQTQELVAIKIIKNKKAFLNQAQIELRLLELMNQHDTEMKYYIVHLKRHFMFRNHLCLVFELLSYNLYDLLRNTH 205          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYR1A_XENLA (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Xenopus laevis GN=dyrk1a PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 41/113 (36.28%), Postives = 72/113 (63.72%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            DD    Y+   GE    RY+I S +G+G+FG+V++ +DR  QE VAIK++++ + + + A IE+ +L+ + K+D     + V ++  F +RNH+C+VFE L  +L++ L+  N
Sbjct:  133 DDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTN 245          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYR1A_RAT (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Rattus norvegicus GN=Dyrk1a PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 41/113 (36.28%), Postives = 72/113 (63.72%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            DD    Y+   GE    RY+I S +G+G+FG+V++ +DR  QE VAIK++++ + + + A IE+ +L+ + K+D     + V ++  F +RNH+C+VFE L  +L++ L+  N
Sbjct:  141 DDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTN 253          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYR1A_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Mus musculus GN=Dyrk1a PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 41/113 (36.28%), Postives = 72/113 (63.72%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            DD    Y+   GE    RY+I S +G+G+FG+V++ +DR  QE VAIK++++ + + + A IE+ +L+ + K+D     + V ++  F +RNH+C+VFE L  +L++ L+  N
Sbjct:  141 DDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTN 253          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYR1A_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Homo sapiens GN=DYRK1A PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 41/113 (36.28%), Postives = 72/113 (63.72%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            DD    Y+   GE    RY+I S +G+G+FG+V++ +DR  QE VAIK++++ + + + A IE+ +L+ + K+D     + V ++  F +RNH+C+VFE L  +L++ L+  N
Sbjct:  141 DDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTN 253          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: POM1_SCHPO (Dual specificity protein kinase pom1 OS=Schizosaccharomyces pombe GN=pom1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.640e-16
Identity = 39/112 (34.82%), Postives = 71/112 (63.39%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            DD  G Y   LG+++  RY+++  +G+G+FG+VL C D +T + VA+K++R+ +++   A++E  +LQ + + D       VQ  + F +R+H+C+  E LG +L+E +K N
Sbjct:  681 DDERGDYKVVLGDHIAYRYEVVDFLGKGSFGQVLRCIDYETGKLVALKIIRNKKRFHMQALVETKILQKIREWDPLDEYCMVQYTDHFYFRDHLCVATELLGKNLYELIKSN 792          
The following BLAST results are available for this feature:
BLAST of FC920407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
DYRK2_DROME1.483e-1733.63Dual specificity tyrosine-phosphorylation-regulate... [more]
PRP4B_DICDI3.304e-1736.28Serine/threonine-protein kinase prpf4B OS=Dictyost... [more]
DYR1B_MOUSE7.361e-1729.87Dual specificity tyrosine-phosphorylation-regulate... [more]
DYR1A_XENTR7.361e-1736.28Dual specificity tyrosine-phosphorylation-regulate... [more]
DYR1B_HUMAN9.614e-1735.40Dual specificity tyrosine-phosphorylation-regulate... [more]
DYR1A_XENLA9.614e-1736.28Dual specificity tyrosine-phosphorylation-regulate... [more]
DYR1A_RAT9.614e-1736.28Dual specificity tyrosine-phosphorylation-regulate... [more]
DYR1A_MOUSE9.614e-1736.28Dual specificity tyrosine-phosphorylation-regulate... [more]
DYR1A_HUMAN9.614e-1736.28Dual specificity tyrosine-phosphorylation-regulate... [more]
POM1_SCHPO1.640e-1634.82Dual specificity protein kinase pom1 OS=Schizosacc... [more]

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Properties
Property NameValue
Genbank descriptionC32007H08EF RVDevelop1 Citrus clementina cDNA clone C32007H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920407 ID=FC920407; Name=FC920407; organism=Citrus clementina; type=EST; length=677bp
ATCGTCACATTCGCCCAAAATATTCCCCCAATGCATAGGAACCCTAATTT
CCGAATGCTACCGTCATATCATCTCTCGCACTCTTATAATTCTGTTCGAA
TTTTCTACTAATATTCAAAACTATTGAGGAGTTTTGTGCTGCAGATACTT
AGGTTAAAAATCATACAAAGGAATAATAAATAGCAAACGATGATGGAGCA
GGAGCGAACCACTAAACGACGTCGGCTCGCTTGGGACGTGGCGCCATCGG
AGGCAGAGGCGCAACGGGCTCTGGTGGTGGGCCATGAAGGGGCTACGGCG
GCGGCTGCAAAACACGTGTCGCCGCCGAGAAGGGACGATGATCGTGAGGG
ACATTACGTTTTTAATCTCGGCGAAAATCTCACCCCCAGATATAAAATAC
TTAGCAAAATGGGTGAAGGCACATTTGGCCGTGTTTTGGAATGTTGGGAC
CGTCAAACACAGGAGCGTGTGGCAATCAAGGTAGTCAGAAGTATACGCAA
GTACCGTGATGCTGCAATGATTGAAATCGATGTTCTTCAGCATCTTGCTA
AAAATGACAAAGGCGGCAGCTCACATTGTGTGCAGATTCGAAATTGGTTT
GATTATCGCAATCATATTTGTATTGTGTTTGAGAAGCTTGGACCAAGTTT
ATTTGAATTTCTAAAGAGAAATAATAC
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