FC920407

Overview
NameFC920407
Unique NameFC920407
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8317 contig Ccv1_Contig8317:4..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: MNB_DROME (Serine/threonine-protein kinase minibrain OS=Drosophila melanogaster GN=mnb PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 38/113 (33.63%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            DD    Y+   GE    RY+I S +G+G+FG+V++ +D + Q  VAIK++++ + + + A IE+ +L+ + + D     + V+++  F +RNH+C+VFE L  +L++ L+  N
Sbjct:  146 DDDNHDYIIKNGEKFLDRYEIDSLIGKGSFGQVVKAYDHEEQCHVAIKIIKNKKPFLNQAQIEVKLLEMMNRADAENKYYIVKLKRHFMWRNHLCLVFELLSYNLYDLLRNTN 258          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYRK2_DICDI (Probable serine/threonine-protein kinase dyrk2 OS=Dictyostelium discoideum GN=dyrk2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.232e-16
Identity = 38/113 (33.63%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            D+  G Y     +++  R++I+S +G+G+F +V++ +D +T E VA+K++R+ +++ + A+ EI +L++L  ND   ++  V + N+F +RNH+ + FE L  +L++FLK N+
Sbjct:  587 DNDIGEYKVVERDHIAYRFEIVSILGQGSFCQVVKGYDYKTGEMVALKILRNQKRFHNQALTEIKILEYLKTNDPNSTASIVHLNNYFYFRNHLILTFELLSMNLYDFLKVNH 699          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: MBK1_CAEBR (Dual specificity tyrosine-phosphorylation-regulated kinase mbk-1 OS=Caenorhabditis briggsae GN=mbk-1 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 43/115 (37.39%), Postives = 70/115 (60.87%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSK--MGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            DD+   Y+   GE    RY ILS   +G+G+FG+V + +D  T+E VAIK++++ + + D A IEI +L+    +DK    + V ++  F +R H+C+VFE L  +L++ LK  N
Sbjct:  347 DDQNYDYILKNGEIFDKRYVILSDTPVGKGSFGQVTKAYDTVTKEEVAIKIIKNKKTFFDQAQIEIHLLELTNAHDKDNKYNIVTLKGHFVHRAHLCLVFELLSYNLYDLLKNTN 461          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: HIPK1_RAT (Homeodomain-interacting protein kinase 1 OS=Rattus norvegicus GN=Hipk1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 48/140 (34.29%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  262 QRALVVGHEGATAAAAKHVSPPRRDDDREGHYVFNLGE---NLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            Q   VVG     AA    V+        EG Y     E   ++T  Y++L  +G GTFG+V +CW R T+E VAIK++++   Y     IE+ +L  L+ ++     + V+    F ++NH C+VFE L  +L++FLK+N
Sbjct:  148 QNRTVVG----AAATTTTVTTKSSSSSGEGDYQLVQHEILCSMTNSYEVLEFLGRGTFGQVAKCWKRSTKEIVAIKILKNHPSYARQGQIEVSILSRLS-SENADEYNFVRSYECFQHKNHTCLVFEMLEQNLYDFLKQN 282          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: HIPK1_MOUSE (Homeodomain-interacting protein kinase 1 OS=Mus musculus GN=Hipk1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 48/140 (34.29%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  262 QRALVVGHEGATAAAAKHVSPPRRDDDREGHYVFNLGE---NLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            Q   VVG     AA    V+        EG Y     E   ++T  Y++L  +G GTFG+V +CW R T+E VAIK++++   Y     IE+ +L  L+ ++     + V+    F ++NH C+VFE L  +L++FLK+N
Sbjct:  148 QNRTVVG----AAATTTTVTTKSSSSSGEGDYQLVQHEILCSMTNSYEVLEFLGRGTFGQVAKCWKRSTKEIVAIKILKNHPSYARQGQIEVSILSRLS-SENADEYNFVRSYECFQHKNHTCLVFEMLEQNLYDFLKQN 282          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: HIPK1_HUMAN (Homeodomain-interacting protein kinase 1 OS=Homo sapiens GN=HIPK1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 48/140 (34.29%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  262 QRALVVGHEGATAAAAKHVSPPRRDDDREGHYVFNLGE---NLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            Q   VVG     AA    V+        EG Y     E   ++T  Y++L  +G GTFG+V +CW R T+E VAIK++++   Y     IE+ +L  L+ ++     + V+    F ++NH C+VFE L  +L++FLK+N
Sbjct:  148 QNRTVVG----AAATTTTVTTKSSSSSGEGDYQLVQHEILCSMTNSYEVLEFLGRGTFGQVAKCWKRSTKEIVAIKILKNHPSYARQGQIEVSILSRLS-SENADEYNFVRSYECFQHKNHTCLVFEMLEQNLYDFLKQN 282          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: HIPK2_MOUSE (Homeodomain-interacting protein kinase 2 OS=Mus musculus GN=Hipk2 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 46/133 (34.59%), Postives = 75/133 (56.39%), Query Frame = 1
Query:  289 GATAAAAKHVSPPRRDD--DREGHYVFNLGE---NLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            GAT A A   +   ++   + EG Y     E   ++T  Y++L  +G GTFG+V++CW R T E VAIK++++   Y     IE+ +L  L+  +     + V+    F ++NH C+VFE L  +L++FLK+N
Sbjct:  160 GATVATATTSTATSKNSGSNSEGDYQLVQHEVLCSMTNTYEVLEFLGRGTFGQVVKCWKRGTNEIVAIKILKNHPSYARQGQIEVSILARLS-TESADDYNFVRAYECFQHKNHTCLVFEMLEQNLYDFLKQN 291          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: HIPK2_MESAU (Homeodomain-interacting protein kinase 2 OS=Mesocricetus auratus GN=Hipk2 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 46/133 (34.59%), Postives = 75/133 (56.39%), Query Frame = 1
Query:  289 GATAAAAKHVSPPRRDD--DREGHYVFNLGE---NLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            GAT A A   +   ++   + EG Y     E   ++T  Y++L  +G GTFG+V++CW R T E VAIK++++   Y     IE+ +L  L+  +     + V+    F ++NH C+VFE L  +L++FLK+N
Sbjct:  160 GATVATATTSTATSKNSGSNSEGDYQLVQHEVLCSMTNTYEVLEFLGRGTFGQVVKCWKRGTNEIVAIKILKNHPSYARQGQIEVSILARLS-TESADDYNFVRAYECFQHKNHTCLVFEMLEQNLYDFLKQN 291          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: HIPK2_HUMAN (Homeodomain-interacting protein kinase 2 OS=Homo sapiens GN=HIPK2 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 46/133 (34.59%), Postives = 75/133 (56.39%), Query Frame = 1
Query:  289 GATAAAAKHVSPPRRDD--DREGHYVFNLGE---NLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            GAT A A   +   ++   + EG Y     E   ++T  Y++L  +G GTFG+V++CW R T E VAIK++++   Y     IE+ +L  L+  +     + V+    F ++NH C+VFE L  +L++FLK+N
Sbjct:  160 GATVATATTSTATSKNSGSNSEGDYQLVQHEVLCSMTNTYEVLEFLGRGTFGQVVKCWKRGTNEIVAIKILKNHPSYARQGQIEVSILARLS-TESADDYNFVRAYECFQHKNHTCLVFEMLEQNLYDFLKQN 291          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYRK1_DICDI (Probable serine/threonine-protein kinase dyrk1 OS=Dictyostelium discoideum GN=dyrk1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 36/113 (31.86%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            DD    Y+  +GE    R++I+S +G+G+FG+V++ +D   +E VAIK++++   + + A+IEI +L+ +   D       +++++ F +RNH+CIV E L  +L++ L+  +
Sbjct:  286 DDENADYIVRIGEVFVDRFEIISSLGKGSFGQVVKAFDSVLKEYVAIKIIKNKVPFYNQALIEIRLLELMNNKDPEDQYKIIKLKHHFKFRNHLCIVTELLSYNLYDLLRNTH 398          
The following BLAST results are available for this feature:
BLAST of FC920407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
MNB_DROME3.653e-1633.63Serine/threonine-protein kinase minibrain OS=Droso... [more]
DYRK2_DICDI6.232e-1633.63Probable serine/threonine-protein kinase dyrk2 OS=... [more]
MBK1_CAEBR1.063e-1537.39Dual specificity tyrosine-phosphorylation-regulate... [more]
HIPK1_RAT1.813e-1534.29Homeodomain-interacting protein kinase 1 OS=Rattus... [more]
HIPK1_MOUSE1.813e-1534.29Homeodomain-interacting protein kinase 1 OS=Mus mu... [more]
HIPK1_HUMAN1.813e-1534.29Homeodomain-interacting protein kinase 1 OS=Homo s... [more]
HIPK2_MOUSE3.093e-1534.59Homeodomain-interacting protein kinase 2 OS=Mus mu... [more]
HIPK2_MESAU3.093e-1534.59Homeodomain-interacting protein kinase 2 OS=Mesocr... [more]
HIPK2_HUMAN3.093e-1534.59Homeodomain-interacting protein kinase 2 OS=Homo s... [more]
DYRK1_DICDI3.093e-1531.86Probable serine/threonine-protein kinase dyrk1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32007H08EF RVDevelop1 Citrus clementina cDNA clone C32007H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920407 ID=FC920407; Name=FC920407; organism=Citrus clementina; type=EST; length=677bp
ATCGTCACATTCGCCCAAAATATTCCCCCAATGCATAGGAACCCTAATTT
CCGAATGCTACCGTCATATCATCTCTCGCACTCTTATAATTCTGTTCGAA
TTTTCTACTAATATTCAAAACTATTGAGGAGTTTTGTGCTGCAGATACTT
AGGTTAAAAATCATACAAAGGAATAATAAATAGCAAACGATGATGGAGCA
GGAGCGAACCACTAAACGACGTCGGCTCGCTTGGGACGTGGCGCCATCGG
AGGCAGAGGCGCAACGGGCTCTGGTGGTGGGCCATGAAGGGGCTACGGCG
GCGGCTGCAAAACACGTGTCGCCGCCGAGAAGGGACGATGATCGTGAGGG
ACATTACGTTTTTAATCTCGGCGAAAATCTCACCCCCAGATATAAAATAC
TTAGCAAAATGGGTGAAGGCACATTTGGCCGTGTTTTGGAATGTTGGGAC
CGTCAAACACAGGAGCGTGTGGCAATCAAGGTAGTCAGAAGTATACGCAA
GTACCGTGATGCTGCAATGATTGAAATCGATGTTCTTCAGCATCTTGCTA
AAAATGACAAAGGCGGCAGCTCACATTGTGTGCAGATTCGAAATTGGTTT
GATTATCGCAATCATATTTGTATTGTGTTTGAGAAGCTTGGACCAAGTTT
ATTTGAATTTCTAAAGAGAAATAATAC
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