FC920407

Overview
NameFC920407
Unique NameFC920407
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8317 contig Ccv1_Contig8317:4..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: PRP4B_MOUSE (Serine/threonine-protein kinase PRP4 homolog OS=Mus musculus GN=Prpf4b PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 39/120 (32.50%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  319 SPPRRDD--DREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDR-QTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKR 669
            +P  RD+  D EG+Y  N+GE L  RY +    G+G F  V+   D  +  + VA+K++R+    +   + E++ L+ L   D     HC+++   F ++ H+C+VFE L  +L E LK+
Sbjct:  661 NPNLRDNWTDAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKK 780          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: PRP4B_HUMAN (Serine/threonine-protein kinase PRP4 homolog OS=Homo sapiens GN=PRPF4B PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 39/120 (32.50%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  319 SPPRRDD--DREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDR-QTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKR 669
            +P  RD+  D EG+Y  N+GE L  RY +    G+G F  V+   D  +  + VA+K++R+    +   + E++ L+ L   D     HC+++   F ++ H+C+VFE L  +L E LK+
Sbjct:  661 NPNLRDNWTDAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKK 780          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: PRP4B_BOVIN (Serine/threonine-protein kinase PRP4 homolog OS=Bos taurus GN=PRPF4B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 39/120 (32.50%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  319 SPPRRDD--DREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDR-QTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKR 669
            +P  RD+  D EG+Y  N+GE L  RY +    G+G F  V+   D  +  + VA+K++R+    +   + E++ L+ L   D     HC+++   F ++ H+C+VFE L  +L E LK+
Sbjct:  662 NPNLRDNWTDAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKK 781          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: SPK1_CAEEL (Serine/threonine-protein kinase spk-1 OS=Caenorhabditis elegans GN=spk-1 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 9.312e-12
Identity = 57/195 (29.23%), Postives = 87/195 (44.62%), Query Frame = 1
Query:  139 LQILRLKIIQRNNK*QTMMEQERTTKRRRLA-WDVAPSEAEAQRALVVGHE---------GATAAAAKHVSPPRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKG--GSSHCVQIRNWFDYR----NHICIVFEKLGPSLFEFLKRNN 675
            + I R  II RNNK     + E      RL    V+P  +++      GH          G    +        RD  R G++  N+G+    RY ++ K+G G F  V   WD Q +  VA+K+V+S   Y +AA+ EI +L  +   D    G    VQ+ + F        H+ +VFE LG +L + + R+N
Sbjct:  333 ISIPRPSIIPRNNK-----KTEVNANEERLDDLSVSPGRSDSPGGGGGGHSDSFQDPMDPGEQLGSDDEEQEDPRDYKRGGYHPVNIGDVFNARYHVIRKLGWGHFSTVWLAWDTQDKRFVAMKIVKSAEHYTEAALDEIKLLLSVRSADPNDIGCHKVVQLLDEFTVTGINGQHVAMVFEVLGCNLLKLIIRSN 522          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: YAK1_ENCCU (Probable dual specificity protein kinase YAK1 homolog OS=Encephalitozoon cuniculi GN=YAK1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  367 LGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLK 666
            L +N + +Y I+  +G GTFG+V+ C     +E VAIKVV++  KY +  M E+ +L  L  N+   +   V I++ F Y+ H+CIV E LG +L+ FLK
Sbjct:   32 LAKNKSQKYMIIDMLGTGTFGQVVRCVGSDGEE-VAIKVVKNQPKYYNYEMNEVRILHKLLYNNL--NDRFVTIKDVFMYKQHLCIVEELLGRNLYTFLK 128          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DSK1_SCHPO (Protein kinase dsk1 OS=Schizosaccharomyces pombe GN=dsk1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 39/113 (34.51%), Postives = 64/113 (56.64%), Query Frame = 1
Query:  349 GHYVFNLGENLTPR-YKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKG--GSSHCVQIRNWFDYRN----HICIVFEKLGPSLFEFLK 666
            G++   +GE    R Y +  K+G G F  V   +DR  + RVA+KVVRS   YR+ ++ EI +LQ + + D+   G  H + + ++F +R     H+C+VFE LG +L   ++
Sbjct:   66 GYHPVYIGEEFHHRRYVVERKLGWGHFSTVWLAYDRAAKRRVALKVVRSAEHYRETSIDEIRILQKIREGDEKHLGKKHIISLLDYFVHRGPNGAHVCMVFEVLGENLLSLIQ 178          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: SRPK1_HUMAN (Serine/threonine-protein kinase SRPK1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 45/168 (26.79%), Postives = 82/168 (48.81%), Query Frame = 1
Query:  214 KRRRLAWDVAPSEAEAQRALVVGHEGATAAAAKHVSPPRRDDDRE--------GHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYR------NHICIVFEKLGPSLFEFLKRNN 675
            KR +   D A  ++E Q      H  +     +       DD++E        G+++  +G+    RY ++ K+G G F  V   WD Q ++ VA+KVV+S   Y + A+ EI +L+ +  +D    +  + ++   D++       HIC+VFE LG  L +++ ++N
Sbjct:   13 KRTKAKKDKAQRKSETQHRGSAPHSESDLPEQEEEILGSDDDEQEDPNDYCKGGYHLVKIGDLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSN 180          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: SRPK1_PONAB (Serine/threonine-protein kinase SRPK1 OS=Pongo abelii GN=SRPK1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 45/168 (26.79%), Postives = 81/168 (48.21%), Query Frame = 1
Query:  214 KRRRLAWDVAPSEAEAQRALVVGHEGATAAAAKHVSPPRRDDDRE--------GHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYR------NHICIVFEKLGPSLFEFLKRNN 675
            KR +   D A  + E Q      H  +     +       DD++E        G+++  +G+    RY ++ K+G G F  V   WD Q ++ VA+KVV+S   Y + A+ EI +L+ +  +D    +  + ++   D++       HIC+VFE LG  L +++ ++N
Sbjct:   13 KRTKAKKDKAQRKPETQHRGSAPHSESDLPEQEEEILGSDDDEQEDPNDYCKGGYHLVKIGDLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSN 180          
The following BLAST results are available for this feature:
BLAST of FC920407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
PRP4B_MOUSE4.938e-1332.50Serine/threonine-protein kinase PRP4 homolog OS=Mu... [more]
PRP4B_HUMAN4.938e-1332.50Serine/threonine-protein kinase PRP4 homolog OS=Ho... [more]
PRP4B_BOVIN4.938e-1332.50Serine/threonine-protein kinase PRP4 homolog OS=Bo... [more]
SPK1_CAEEL9.312e-1229.23Serine/threonine-protein kinase spk-1 OS=Caenorhab... [more]
YAK1_ENCCU2.075e-1140.00Probable dual specificity protein kinase YAK1 homo... [more]
DSK1_SCHPO2.709e-1134.51Protein kinase dsk1 OS=Schizosaccharomyces pombe G... [more]
SRPK1_HUMAN4.622e-1126.79Serine/threonine-protein kinase SRPK1 OS=Homo sapi... [more]
SRPK1_PONAB7.883e-1126.79Serine/threonine-protein kinase SRPK1 OS=Pongo abe... [more]

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Properties
Property NameValue
Genbank descriptionC32007H08EF RVDevelop1 Citrus clementina cDNA clone C32007H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920407 ID=FC920407; Name=FC920407; organism=Citrus clementina; type=EST; length=677bp
ATCGTCACATTCGCCCAAAATATTCCCCCAATGCATAGGAACCCTAATTT
CCGAATGCTACCGTCATATCATCTCTCGCACTCTTATAATTCTGTTCGAA
TTTTCTACTAATATTCAAAACTATTGAGGAGTTTTGTGCTGCAGATACTT
AGGTTAAAAATCATACAAAGGAATAATAAATAGCAAACGATGATGGAGCA
GGAGCGAACCACTAAACGACGTCGGCTCGCTTGGGACGTGGCGCCATCGG
AGGCAGAGGCGCAACGGGCTCTGGTGGTGGGCCATGAAGGGGCTACGGCG
GCGGCTGCAAAACACGTGTCGCCGCCGAGAAGGGACGATGATCGTGAGGG
ACATTACGTTTTTAATCTCGGCGAAAATCTCACCCCCAGATATAAAATAC
TTAGCAAAATGGGTGAAGGCACATTTGGCCGTGTTTTGGAATGTTGGGAC
CGTCAAACACAGGAGCGTGTGGCAATCAAGGTAGTCAGAAGTATACGCAA
GTACCGTGATGCTGCAATGATTGAAATCGATGTTCTTCAGCATCTTGCTA
AAAATGACAAAGGCGGCAGCTCACATTGTGTGCAGATTCGAAATTGGTTT
GATTATCGCAATCATATTTGTATTGTGTTTGAGAAGCTTGGACCAAGTTT
ATTTGAATTTCTAAAGAGAAATAATAC
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