FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLCV (Chaperone protein dnaJ OS=Chlamydophila caviae GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +YYDVLGVS TAS  EIKK+Y   A K HPDKNP D  A + F+ + EAY+VLSDP +R++YD YGK+G
Sbjct:    2 DYYDVLGVSKTASPEEIKKSYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDPQKRESYDRYGKNG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLAB (Chaperone protein dnaJ OS=Chlamydophila abortus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +YYDVLGVS TAS  EIKK+Y   A K HPDKNP D  A + F+ + EAY+VLSDP +R++YD YGK G
Sbjct:    2 DYYDVLGVSKTASPEEIKKSYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDPQKRESYDRYGKDG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJA3_MOUSE (DnaJ homolog subfamily A member 3, mitochondrial OS=Mus musculus GN=Dnaja3 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17
Identity = 44/106 (41.51%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  171 SVMVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA------------IIDPAAIFAMLFG 452
            S  + + +YY +LGV   AS+ +IKKAYY  A+K HPD N +DP A + F  L EAY+VLSD  +R+ YDAYG +G                  +DP  +F  +FG
Sbjct:   86 SASLAKDDYYQILGVPRNASQKDIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSAGFDPGTSSSGQGYWRGGPSVDPEELFRKIFG 191          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLFF (Chaperone protein dnaJ OS=Chlamydophila felis (strain Fe/C-56) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +YYDVLGVS TAS  EIKKAY   A K HPDKNP D  A + F+ + EAY+VLSD  +R++YD YGK G
Sbjct:    2 DYYDVLGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJA1_PONAB (DnaJ homolog subfamily A member 1 OS=Pongo abelii GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG----KSGISTEAIIDPAAIFAMLFG 452
            MVKET YYDVLGV P A++ E+KKAY   A K HPDKNPN+    + F+ + +AY+VLSD  +R+ YD  G    K G +      P  IF M FG
Sbjct:    1 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFG 93          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJA1_HUMAN (DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG----KSGISTEAIIDPAAIFAMLFG 452
            MVKET YYDVLGV P A++ E+KKAY   A K HPDKNPN+    + F+ + +AY+VLSD  +R+ YD  G    K G +      P  IF M FG
Sbjct:    1 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFG 93          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJA1_BOVIN (DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG----KSGISTEAIIDPAAIFAMLFG 452
            MVKET YYDVLGV P A++ E+KKAY   A K HPDKNPN+    + F+ + +AY+VLSD  +R+ YD  G    K G +      P  IF M FG
Sbjct:    1 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFG 93          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ1_CERAE (DnaJ homolog subfamily A member 1 OS=Cercopithecus aethiops GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG----KSGISTEAIIDPAAIFAMLFG 452
            MVKET YYDVLGV P A++ E+KKAY   A K HPDKNPN+    + F+ + +AY+VLSD  +R+ YD  G    K G +      P  IF M FG
Sbjct:    1 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFG 93          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEMY (Chaperone protein dnaJ OS=Pseudomonas mendocina (strain ymp) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE-----AIIDPAAIFAMLFGSELFEDYIG 479
            +YY+VLGV   ASEAE+KKAY   A K HPD+NP+D  A + F+   EAY+VLSD  +R AYD YG +G+  +           A F+ +FG ++F D+ G
Sbjct:    5 DYYEVLGVERGASEAELKKAYRRLAMKYHPDRNPDDKGAEEKFKEANEAYEVLSDAGKRSAYDQYGHAGVDPQMGGGGGAGFGGANFSDIFG-DVFSDFFG 104          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_HALOH (Chaperone protein dnaJ OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE 410
            M    +YY++LGVS  A + EIKKAY   ARK HPD N +DP A + F+ + EAY++LSDP +R  YD YG +GI+ E
Sbjct:    1 MATSKDYYEILGVSRDADQKEIKKAYRRLARKYHPDINKDDPDAEEKFKEISEAYEILSDPDKRARYDQYGHAGINEE 78          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_CHLCV3.790e-1760.87Chaperone protein dnaJ OS=Chlamydophila caviae GN=... [more]
DNAJ_CHLAB4.950e-1760.87Chaperone protein dnaJ OS=Chlamydophila abortus GN... [more]
DNJA3_MOUSE8.443e-1741.51DnaJ homolog subfamily A member 3, mitochondrial O... [more]
DNAJ_CHLFF1.881e-1660.87Chaperone protein dnaJ OS=Chlamydophila felis (str... [more]
DNJA1_PONAB3.208e-1648.96DnaJ homolog subfamily A member 1 OS=Pongo abelii ... [more]
DNJA1_HUMAN3.208e-1648.96DnaJ homolog subfamily A member 1 OS=Homo sapiens ... [more]
DNJA1_BOVIN3.208e-1648.96DnaJ homolog subfamily A member 1 OS=Bos taurus GN... [more]
DNAJ1_CERAE3.208e-1648.96DnaJ homolog subfamily A member 1 OS=Cercopithecus... [more]
DNAJ_PSEMY4.190e-1645.54Chaperone protein dnaJ OS=Pseudomonas mendocina (s... [more]
DNAJ_HALOH4.190e-1651.28Chaperone protein dnaJ OS=Halothermothrix orenii (... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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