FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_NITEU (Chaperone protein dnaJ OS=Nitrosomonas europaea GN=dnaJ PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIG 479
            + +++YY+VLGV   A E E+KKAY   A K HPD+N  D  A + F+ + EAY++LSDP +R AYD +G +G++       A  F+  F S++F D  G
Sbjct:    1 MSQSDYYEVLGVGRDADENELKKAYRKLAMKYHPDRNAGDTKAEERFKNIKEAYEILSDPNKRAAYDQFGHAGLNGGMGGAGAQGFSDAF-SDIFSDLFG 99          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_MARAV (Chaperone protein dnaJ OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA---IIDPAAIFAMLFGSELFEDYIG 479
            +YY+VLG+S  A E EIK+AY   A K HPD+NP+D  A   F+   EAY++L+D ++R AYD +G +G+  +A        A F+ +FG ++F D  G
Sbjct:    5 DYYEVLGISRDADEKEIKRAYRKLAMKYHPDRNPDDKDAETKFKEASEAYEILADSSKRAAYDQFGHAGVDGQAGGGFGGGGASFSDIFG-DVFGDIFG 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURS3 (Chaperone protein dnaJ OS=Burkholderia sp. (strain 383) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV+  A + EIKKAY   A K HPD+NP++  A ++F+ + EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVAKNAGDDEIKKAYRKLAMKYHPDRNPDNKDAEEHFKEVKEAYEMLSDGQKRAAYDQYGHAGVDPNMGGAGAQGFGGFADAFG-DIFGDIFGQAA 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ANAMM (Chaperone protein dnaJ OS=Anaplasma marginale (strain St. Maries) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI--IDPAAIFAMLFGSELFEDYIG 479
            +YY++L VS  AS  EIKK+Y     K HPDKNP D  A + F+ + EAY+VLS+P +R AYD YG S  ++      D  + F+  F S++F+D+ G
Sbjct:    5 DYYEILEVSRNASAEEIKKSYRKMVFKYHPDKNPGDKKAEEKFKKISEAYEVLSNPEKRAAYDRYGHSTFTSGGASGFDFTSGFSTDF-SDIFQDFFG 101          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ANAMF (Chaperone protein dnaJ OS=Anaplasma marginale (strain Florida) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI--IDPAAIFAMLFGSELFEDYIG 479
            +YY++L VS  AS  EIKK+Y     K HPDKNP D  A + F+ + EAY+VLS+P +R AYD YG S  ++      D  + F+  F S++F+D+ G
Sbjct:    5 DYYEILEVSRNASAEEIKKSYRKMVFKYHPDKNPGDKKAEEKFKKISEAYEVLSNPEKRAAYDRYGHSTFTSGGASGFDFTSGFSTDF-SDIFQDFFG 101          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_TERTT (Chaperone protein dnaJ OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAA----IFAMLFGSELFEDYIG 479
            +YY+VLGV+   SE ++KKAY   A K HPD+NP+D  A + F+   EAY+VLSD  +R AYD +G +G+  +  +   A     F+ +FG ++F D  G
Sbjct:    5 DYYEVLGVARDVSEQDLKKAYRKVAMKFHPDRNPDDASAEEKFKEASEAYEVLSDKQKRAAYDQFGHAGVEGQGGMGGGAEGFGSFSDIFG-DVFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHEB9 (Chaperone protein dnaJ OS=Shewanella baltica (strain OS195) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + + +YY+VLGVS   SE EIKKAY   A K HPD+NP D  A  NF+ + EAY++L+D  ++ AYD +G +G+
Sbjct:    1 MSKRDYYEVLGVSRDTSEREIKKAYKRLAMKFHPDRNPGDKTAEANFKEIKEAYEILTDADKKAAYDQFGHAGV 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHEB8 (Chaperone protein dnaJ OS=Shewanella baltica (strain OS185) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + + +YY+VLGVS   SE EIKKAY   A K HPD+NP D  A  NF+ + EAY++L+D  ++ AYD +G +G+
Sbjct:    1 MSKRDYYEVLGVSRDTSEREIKKAYKRLAMKFHPDRNPGDKTAEANFKEIKEAYEILTDADKKAAYDQFGHAGV 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHEB5 (Chaperone protein dnaJ OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + + +YY+VLGVS   SE EIKKAY   A K HPD+NP D  A  NF+ + EAY++L+D  ++ AYD +G +G+
Sbjct:    1 MSKRDYYEVLGVSRDTSEREIKKAYKRLAMKFHPDRNPGDKTAEANFKEIKEAYEILTDADKKAAYDQFGHAGV 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHEB2 (Chaperone protein dnaJ OS=Shewanella baltica (strain OS223) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + + +YY+VLGVS   SE EIKKAY   A K HPD+NP D  A  NF+ + EAY++L+D  ++ AYD +G +G+
Sbjct:    1 MSKRDYYEVLGVSRDTSEREIKKAYKRLAMKFHPDRNPGDKTAEANFKEIKEAYEILTDADKKAAYDQFGHAGV 74          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_NITEU1.761e-1442.00Chaperone protein dnaJ OS=Nitrosomonas europaea GN... [more]
DNAJ_MARAV1.761e-1442.42Chaperone protein dnaJ OS=Marinobacter aquaeolei (... [more]
DNAJ_BURS31.761e-1444.12Chaperone protein dnaJ OS=Burkholderia sp. (strain... [more]
DNAJ_ANAMM1.761e-1443.88Chaperone protein dnaJ OS=Anaplasma marginale (str... [more]
DNAJ_ANAMF1.761e-1443.88Chaperone protein dnaJ OS=Anaplasma marginale (str... [more]
DNAJ_TERTT2.299e-1442.00Chaperone protein dnaJ OS=Teredinibacter turnerae ... [more]
DNAJ_SHEB92.299e-1448.65Chaperone protein dnaJ OS=Shewanella baltica (stra... [more]
DNAJ_SHEB82.299e-1448.65Chaperone protein dnaJ OS=Shewanella baltica (stra... [more]
DNAJ_SHEB52.299e-1448.65Chaperone protein dnaJ OS=Shewanella baltica (stra... [more]
DNAJ_SHEB22.299e-1448.65Chaperone protein dnaJ OS=Shewanella baltica (stra... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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