FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEE4 (Chaperone protein dnaJ OS=Pseudomonas entomophila (strain L48) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPA----------AIFAMLFGSELFEDYIG 479
            ++Y+VLGV   ASE ++KKAY   A K HPD+NP D  +   F+   EAY+VLSD ++R AYD YG +G      +DP+          A F+ +FG ++F D+ G
Sbjct:    5 DFYEVLGVERGASEGDLKKAYRRLAMKYHPDRNPGDKESEDKFKEANEAYEVLSDTSKRAAYDQYGHAG------VDPSMGGGGAGFGGANFSDIFG-DVFSDFFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CUPTR (Chaperone protein dnaJ OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI-----IDPAAIFAMLFGSELFEDYIGQ 482
            +YY+VLGV   AS+ EIKKAY   A K HPD+NP+   A + F+   EAY++LSDP ++ AYD YG +G+                FA  FG ++F D  GQ
Sbjct:    5 DYYEVLGVGKNASDDEIKKAYRKLAMKFHPDRNPDSKDAEEKFKEAKEAYEMLSDPEKKAAYDQYGHAGVDPNMAGGFGGAQGYGGFAEAFG-DIFGDIFGQ 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLTR (Chaperone protein dnaJ OS=Chlamydia trachomatis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +YY +LGV+ TA+  EIKKAY   A K HPDKNP D  A + F+ + EAY+VL D  +R++YD YGK G
Sbjct:    2 DYYTILGVAKTATPEEIKKAYRKLAVKYHPDKNPGDAEAERRFKEVSEAYEVLGDAQKRESYDRYGKDG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLTB (Chaperone protein dnaJ OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +YY +LGV+ TA+  EIKKAY   A K HPDKNP D  A + F+ + EAY+VL D  +R++YD YGK G
Sbjct:    2 DYYTILGVAKTATPEEIKKAYRKLAVKYHPDKNPGDAEAERRFKEVSEAYEVLGDAQKRESYDRYGKDG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLTA (Chaperone protein dnaJ OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +YY +LGV+ TA+  EIKKAY   A K HPDKNP D  A + F+ + EAY+VL D  +R++YD YGK G
Sbjct:    2 DYYTILGVAKTATPEEIKKAYRKLAVKYHPDKNPGDAEAERRFKEVSEAYEVLGDAQKRESYDRYGKDG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLT2 (Chaperone protein dnaJ OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +YY +LGV+ TA+  EIKKAY   A K HPDKNP D  A + F+ + EAY+VL D  +R++YD YGK G
Sbjct:    2 DYYTILGVAKTATPEEIKKAYRKLAVKYHPDKNPGDAEAERRFKEVSEAYEVLGDAQKRESYDRYGKDG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLMU (Chaperone protein dnaJ OS=Chlamydia muridarum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +YY +LGV+ TA+  EIKKAY   A K HPDKNP D  A + F+ + EAY+VL D  +R++YD YGK G
Sbjct:    2 DYYTILGVAKTATPEEIKKAYRKLAVKYHPDKNPGDAEAERRFKEVSEAYEVLGDAQKRESYDRYGKDG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURVG (Chaperone protein dnaJ OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV+  AS+ EIKKAY   A K HPD+NP++  A ++F+   EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDNKDAEEHFKEAKEAYEMLSDGQKRAAYDQYGHAGVDPNMAGAGGQGFGGFADAFG-DIFGDIFGQAA 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BLOFL (Chaperone protein dnaJ OS=Blochmannia floridanus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            MVK ++YY++LGVS  A E EIKK+Y   A K HPD+NP D  A   F+ + EAY+VLS+P +R AYD YG
Sbjct:    1 MVK-SDYYEILGVSKNADEREIKKSYKRLAMKFHPDRNPGDVSAESKFKEIKEAYEVLSNPEKRSAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB4_BOVIN (DnaJ homolog subfamily B member 4 OS=Bos taurus GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 49/132 (37.12%), Postives = 72/132 (54.55%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA--------------IIDPAAIFAMLF-GSELFEDYIGQLAMASVASLDIFTEGEEFDA 542
            +YY +LG+   AS+ +IKKAY  +A + HPDKN + P A + F+ + EAY+VLSDP +R+ YD +G+ G+   A                DP A FA  F GS  FE + G+       S ++  +G+ F A
Sbjct:    4 DYYCILGIEKGASDEDIKKAYRKQALRFHPDKNKS-PQAEERFKEVAEAYEVLSDPKKREIYDQFGEEGLKGGAGGTDGQGGTFRYTFHGDPHATFAAFFGGSNPFEIFFGRRMGGGRDSDEMEVDGDPFGA 134          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_PSEE42.299e-1441.51Chaperone protein dnaJ OS=Pseudomonas entomophila ... [more]
DNAJ_CUPTR2.299e-1443.14Chaperone protein dnaJ OS=Cupriavidus taiwanensis ... [more]
DNAJ_CHLTR2.299e-1453.62Chaperone protein dnaJ OS=Chlamydia trachomatis GN... [more]
DNAJ_CHLTB2.299e-1453.62Chaperone protein dnaJ OS=Chlamydia trachomatis (s... [more]
DNAJ_CHLTA2.299e-1453.62Chaperone protein dnaJ OS=Chlamydia trachomatis (s... [more]
DNAJ_CHLT22.299e-1453.62Chaperone protein dnaJ OS=Chlamydia trachomatis (s... [more]
DNAJ_CHLMU2.299e-1453.62Chaperone protein dnaJ OS=Chlamydia muridarum GN=d... [more]
DNAJ_BURVG2.299e-1445.10Chaperone protein dnaJ OS=Burkholderia vietnamiens... [more]
DNAJ_BLOFL2.299e-1454.93Chaperone protein dnaJ OS=Blochmannia floridanus G... [more]
DNJB4_BOVIN3.003e-1437.12DnaJ homolog subfamily B member 4 OS=Bos taurus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
back to top