FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_TOLAT (Chaperone protein dnaJ OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGV  +A E EIKKAY   A K HPD+NP++P + + F+   EAY++LSD  +R AYD +G +G+             A F  +FG ++F D  G
Sbjct:    5 DYYEILGVERSADEREIKKAYKRLAMKFHPDRNPDNPESEEKFKEAKEAYEILSDAQKRAAYDKFGHAGVDPNQAGPGGFGGGADFGDVFG-DIFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PELCD (Chaperone protein dnaJ OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 44/102 (43.14%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIGQL 485
            + + +YY+VLGV   ASE EIKKAY   A K HPDKN  D  A   F+ + EAY +LSD  QR  YD YG +G++        +  +  FG   FED  G +
Sbjct:    1 MSKRDYYEVLGVHRNASETEIKKAYRKLAIKYHPDKNAGDKAAEDKFKEISEAYSILSDTQQRVIYDQYGHAGLNGGG-GGGGSYSSGGFGGTPFEDLFGDI 101          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOTH (Chaperone protein dnaJ OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS 395
            M  + +YY++LGV   AS+AEIKKAY   A++ HPD NP D  A   F+ + EAY+VLSDP +R  YD +G S
Sbjct:    1 MAGKRDYYEILGVDRGASDAEIKKAYRKLAKQYHPDMNPGDKAAEAKFKEINEAYEVLSDPQKRARYDQFGHS 73          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOCE (Chaperone protein dnaJ OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            M  + +YY+VLGV   AS+AE+KKAY   A+K HPD NP D  A   F+ + EAY++LSD  +R  YD +G +G
Sbjct:    1 MADKRDYYEVLGVDKNASDAELKKAYRNLAKKYHPDVNPGDTTAEAKFKEVNEAYEILSDSQKRSRYDQFGHAG 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURXL (Chaperone protein dnaJ OS=Burkholderia xenovorans (strain LB400) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV+  AS+ EIKKAY   A K HPD+NP +  A  +F+ + EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKHHPDRNPGNKDAEGHFKEVKEAYEMLSDSQKRAAYDQYGHAGVDPNMGGAGAQGFGGFADAFG-DIFGDIFGQAA 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURPP (Chaperone protein dnaJ OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV+  AS+ EIKKAY   A K HPD+NP +  A  +F+ + EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKHHPDRNPGNKDAEGHFKEVKEAYEMLSDSQKRAAYDQYGHAGVDPNMGGAGAQGFGGFADAFG-DIFGDIFGQAA 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURP8 (Chaperone protein dnaJ OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY VLGV+  AS+ EIKKAY   A K HPD+NP +  A ++F+   EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYQVLGVAKNASDDEIKKAYRKLAMKHHPDRNPGNKDAEEHFKEAKEAYEMLSDSQKRAAYDQYGHAGVDPNMAGAGAQGFGGFADAFG-DIFGDIFGQAA 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURCM (Chaperone protein dnaJ OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV+  AS+ EIKKAY   A K HPD+NP+   A ++F+   EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYGHAGVDPNMGGAGGQGFGGFADAFG-DIFGDIFGQAA 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURA4 (Chaperone protein dnaJ OS=Burkholderia ambifaria (strain MC40-6) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV+  AS+ EIKKAY   A K HPD+NP+   A ++F+   EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYGHAGVDPNMGGAGGQGFGGFADAFG-DIFGDIFGQAA 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJM_MYCGE (DnaJ-like protein MG200 OS=Mycoplasma genitalium GN=MG200 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 48/156 (30.77%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  183 KETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIGQLAMASVASLDIFTEGEEFDAKKLQDKMKVVQKEREEKLADILRGRLNQYVQGKQED 650
            ++ +YY+VLG++P A ++EIKKA+   A+K HPD+N N P AA+ F  + EA  VLS+P +R  YD YG  G+  E         A  F +++F+ +  ++A + V +     E +E   +      K  Q++ E  L  ++   + +  Q + ++
Sbjct:    4 QKRDYYEVLGITPDADQSEIKKAFRKLAKKYHPDRN-NAPDAAKIFAEINEANDVLSNPKKRANYDKYGFDGVDGEP--------AFNFQADVFQSFFEEIAKSGVFNNQTNPEQKEKKKRYHWFSKKPKQEQPEINLDHVVEQTIKKVQQNQNQN 150          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_TOLAT3.003e-1441.00Chaperone protein dnaJ OS=Tolumonas auensis (strai... [more]
DNAJ_PELCD3.003e-1443.14Chaperone protein dnaJ OS=Pelobacter carbinolicus ... [more]
DNAJ_CLOTH3.003e-1450.68Chaperone protein dnaJ OS=Clostridium thermocellum... [more]
DNAJ_CLOCE3.003e-1448.65Chaperone protein dnaJ OS=Clostridium cellulolytic... [more]
DNAJ_BURXL3.003e-1445.10Chaperone protein dnaJ OS=Burkholderia xenovorans ... [more]
DNAJ_BURPP3.003e-1445.10Chaperone protein dnaJ OS=Burkholderia phytofirman... [more]
DNAJ_BURP83.003e-1445.10Chaperone protein dnaJ OS=Burkholderia phymatum (s... [more]
DNAJ_BURCM3.003e-1445.10Chaperone protein dnaJ OS=Burkholderia ambifaria (... [more]
DNAJ_BURA43.003e-1445.10Chaperone protein dnaJ OS=Burkholderia ambifaria (... [more]
DNAJM_MYCGE3.003e-1430.77DnaJ-like protein MG200 OS=Mycoplasma genitalium G... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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