FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEF5 (Chaperone protein dnaJ OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPA----------AIFAMLFGSELFEDYIG 479
            +YY+VLGV   +S+AE+KKAY   A K HPD+NP D  +   F+   EAY+VLSD ++R AYD YG +G      +DP+            F+ +FG ++F D+ G
Sbjct:    5 DYYEVLGVERGSSDAELKKAYRRLAMKHHPDRNPGDKASEDMFKEANEAYEVLSDSSKRAAYDQYGHAG------VDPSMGGGGGGFGGQNFSDIFG-DVFSDFFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_METCA (Chaperone protein dnaJ OS=Methylococcus capsulatus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG------SELFEDYIGQL 485
            M KE +YY+ LGV   AS+++IKKA+   A K HPD+N ++P A + F+ + EAY VLSDP +R AYD +G +G      IDP+      FG      S++F D  G +
Sbjct:    1 MAKE-DYYETLGVPRNASDSDIKKAFRRLAMKYHPDRNKDNPEAEERFKSVKEAYDVLSDPKKRSAYDQFGHAG------IDPSMGGGGGFGFTGDSFSDIFGDVFGDI 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LEGPN (Chaperone protein dnaJ OS=Legionella pneumophila GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFED 470
            +++ +YY++L VS  AS+AEIKKAY   A K HPD+NP D  A + F+ + +AY +LSD  +R AYD +G +G+       P          ++FED
Sbjct:    1 MEQRDYYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFGHAGVDPSMGGGPGGFGGFGGFGDVFED 97          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LEGPL (Chaperone protein dnaJ OS=Legionella pneumophila (strain Lens) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFED 470
            +++ +YY++L VS  AS+AEIKKAY   A K HPD+NP D  A + F+ + +AY +LSD  +R AYD +G +G+       P          ++FED
Sbjct:    1 MEQRDYYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFGHAGVDPSMGGGPGGFGGFGGFGDVFED 97          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LEGPH (Chaperone protein dnaJ OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFED 470
            +++ +YY++L VS  AS+AEIKKAY   A K HPD+NP D  A + F+ + +AY +LSD  +R AYD +G +G+       P          ++FED
Sbjct:    1 MEQRDYYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFGHAGVDPSMGGGPGGFGGFGGFGDVFED 97          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LEGPC (Chaperone protein dnaJ OS=Legionella pneumophila (strain Corby) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFED 470
            +++ +YY++L VS  AS+AEIKKAY   A K HPD+NP D  A + F+ + +AY +LSD  +R AYD +G +G+       P          ++FED
Sbjct:    1 MEQRDYYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFGHAGVDPSMGGGPGGFGGFGGFGDVFED 97          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LEGPA (Chaperone protein dnaJ OS=Legionella pneumophila (strain Paris) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFED 470
            +++ +YY++L VS  AS+AEIKKAY   A K HPD+NP D  A + F+ + +AY +LSD  +R AYD +G +G+       P          ++FED
Sbjct:    1 MEQRDYYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFGHAGVDPSMGGGPGGFGGFGGFGDVFED 97          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_JANMA (Chaperone protein dnaJ OS=Janthinobacterium sp. (strain Marseille) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDP-------AAIFAMLFGSELFEDYIGQ 482
            ++Y++LGV  +AS+ EIKKAY   A K HPD+NP+   A   F+   EAY++LSDP +R AYD YG +G      +DP          FA  FG ++F D  GQ
Sbjct:    5 DFYEILGVGKSASDEEIKKAYRKLAMKHHPDRNPDSKGAEDKFKEAKEAYEMLSDPQKRDAYDRYGHAG------VDPNMGGGGGGGGFADAFG-DIFGDIFGQ 101          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSL (Chaperone protein dnaJ OS=Geobacter sulfurreducens GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            +YY+VLGV   AS+ EIKKA+   A + HPDKNP+D  A + F+ + EAY+VLSDP +R  YD +G +G+
Sbjct:    7 DYYEVLGVHKNASDTEIKKAFRKLAIQYHPDKNPDDKEAEEKFKEITEAYEVLSDPQKRAQYDQFGHAGV 76          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOD6 (Chaperone protein dnaJ OS=Clostridium difficile (strain 630) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 43/104 (41.35%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIF-AMLFGSELFEDYIGQL 485
            M  + +YY+VLG+S  A   EIKKAY   A K HPD+NP D  A + F+ + EAY+VLSD  +R+ YD +G  G++ +        F    FG   FED  G +
Sbjct:    1 MSTKRDYYEVLGISKGAEAQEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEINEAYEVLSDDTKRKTYDQFGHDGLNGQGGFGGQGGFGGQGFGG--FEDMFGDI 102          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_PSEF53.922e-1441.51Chaperone protein dnaJ OS=Pseudomonas fluorescens ... [more]
DNAJ_METCA3.922e-1442.20Chaperone protein dnaJ OS=Methylococcus capsulatus... [more]
DNAJ_LEGPN3.922e-1440.21Chaperone protein dnaJ OS=Legionella pneumophila G... [more]
DNAJ_LEGPL3.922e-1440.21Chaperone protein dnaJ OS=Legionella pneumophila (... [more]
DNAJ_LEGPH3.922e-1440.21Chaperone protein dnaJ OS=Legionella pneumophila s... [more]
DNAJ_LEGPC3.922e-1440.21Chaperone protein dnaJ OS=Legionella pneumophila (... [more]
DNAJ_LEGPA3.922e-1440.21Chaperone protein dnaJ OS=Legionella pneumophila (... [more]
DNAJ_JANMA3.922e-1443.27Chaperone protein dnaJ OS=Janthinobacterium sp. (s... [more]
DNAJ_GEOSL3.922e-1451.43Chaperone protein dnaJ OS=Geobacter sulfurreducens... [more]
DNAJ_CLOD63.922e-1441.35Chaperone protein dnaJ OS=Clostridium difficile (s... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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