FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SALPK (Chaperone protein dnaJ OS=Salmonella paratyphi A (strain AKU_12601) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI---IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +    +  A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFNGGADFSDIFG-DVFGDIFG 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SALPA (Chaperone protein dnaJ OS=Salmonella paratyphi A GN=dnaJ PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI---IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +    +  A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFNGGADFSDIFG-DVFGDIFG 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEFS (Chaperone protein dnaJ OS=Pseudomonas fluorescens (strain SBW25) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAI----FAMLFGSELFEDYIG 479
            +YY+VLGV   +SEA++KKAY   A K HPD+NP+   + + F+   EAY+ LSDP +R AYD YG +G+        A      F+ +FG ++F D+ G
Sbjct:    5 DYYEVLGVERGSSEADLKKAYRRLAMKHHPDRNPDSKESEEMFKEANEAYECLSDPNKRAAYDQYGHAGVDPSMGGGGAGFGGQNFSDIFG-DVFSDFFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CHRVO (Chaperone protein dnaJ OS=Chromobacterium violaceum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAII-----------DPAAIFAMLFG 452
            + + +YYDVLGV+  AS+ +IKKAY   A K HPD+NP+   A   F+ + EAY++LSD  +R AYD +G +G+  +A +           D A IF+ +FG
Sbjct:    1 MSKRDYYDVLGVNRDASDDDIKKAYRKLAMKYHPDRNPDSKEAEDKFKEVKEAYEILSDSQKRGAYDQFGHAGVDPQAGMGGGGQGFGGFGDFADIFSDIFG 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ARCB4 (Chaperone protein dnaJ OS=Arcobacter butzleri (strain RM4018) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS---------TEAIIDPAAIFAMLFG 452
            E +YY++L +S  + ++ IKKAY   A K HPDKNP D  A + F+ + EAYQVLSD  ++  YD YGK+G+          +    D  +IF  +FG
Sbjct:    3 EIDYYELLEISRNSDKSTIKKAYRQMAMKYHPDKNPGDNEAEEKFKAINEAYQVLSDDEKKSIYDRYGKAGLEGHGQRGGGFSGGFDDLGSIFEEMFG 100          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_THIDA (Chaperone protein dnaJ OS=Thiobacillus denitrificans (strain ATCC 25259) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIGQL 485
            + + +YY+VLGV+  AS+ EIKKAY   A K HPD+NP D  A   F+   +AY++LSD  +R AYD +G +G+  ++ +         F S+ F D  G +
Sbjct:    1 MSKRDYYEVLGVAKNASDEEIKKAYRKLAMKHHPDRNPGDHAAEDKFKEAKQAYEILSDSDKRAAYDQFGHAGVDPQSGMGGGGFGGGGF-SDAFSDIFGDI 101          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHESH (Chaperone protein dnaJ OS=Shewanella sediminis (strain HAW-EB3) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + + +YY+VL VS  ASE EIKKAY   A K HPD+NP D  A  NF+ + EAY++L+D  ++ AYD +G +G+
Sbjct:    1 MSKRDYYEVLSVSRDASEREIKKAYKRLAMKFHPDRNPGDKQAEANFKEVKEAYEILTDADKKAAYDQFGHAGV 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LARHH (Chaperone protein dnaJ OS=Laribacter hongkongensis (strain HLHK9) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            + + ++YDVLGV+  AS+ +IKKAY   A K HPD+NP+   A + F+   EAY++LSD  +R AYD YG +G+  +A
Sbjct:    1 MSKKDFYDVLGVNRDASDDDIKKAYRKLAMKYHPDRNPDSKDAEEKFKEAKEAYEILSDAQKRAAYDQYGHAGVDPQA 78          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: TID_DROVI (Protein tumorous imaginal discs, mitochondrial OS=Drosophila virilis GN=l(2)tid PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  171 SVMVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS 395
            S  ++  +YY  LGV+  A+  +IKKAYY  A+K HPD N +DP A++ FQ + EAY+VLSD  +R+ YD YG++
Sbjct:   73 SSRMQAKDYYATLGVAKNANAKDIKKAYYELAKKYHPDTNKDDPDASKKFQDVSEAYEVLSDDQKRREYDTYGQT 147          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB6_XENTR (DnaJ homolog subfamily B member 6 OS=Xenopus tropicalis GN=dnajb6 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 47/102 (46.08%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS---TEAIIDPAAIFAMLFGS--ELFEDYIG 479
            EYYDVLGV   AS  +IKKAY   A K HPDKNP N   A + F+ + EAY+VLSD  +R  YD YGK G++     +  D    F   F S  ++F D+ G
Sbjct:    3 EYYDVLGVQRNASPEDIKKAYRKLALKWHPDKNPDNKDEAERRFKEVAEAYEVLSDSKKRDIYDKYGKEGLTGGGGGSHFDNPYEFGFTFRSPDDVFRDFFG 104          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_SALPK5.122e-1443.43Chaperone protein dnaJ OS=Salmonella paratyphi A (... [more]
DNAJ_SALPA5.122e-1443.43Chaperone protein dnaJ OS=Salmonella paratyphi A G... [more]
DNAJ_PSEFS5.122e-1442.00Chaperone protein dnaJ OS=Pseudomonas fluorescens ... [more]
DNAJ_CHRVO5.122e-1441.18Chaperone protein dnaJ OS=Chromobacterium violaceu... [more]
DNAJ_ARCB45.122e-1440.82Chaperone protein dnaJ OS=Arcobacter butzleri (str... [more]
DNAJ_THIDA6.690e-1439.22Chaperone protein dnaJ OS=Thiobacillus denitrifica... [more]
DNAJ_SHESH6.690e-1448.65Chaperone protein dnaJ OS=Shewanella sediminis (st... [more]
DNAJ_LARHH6.690e-1446.15Chaperone protein dnaJ OS=Laribacter hongkongensis... [more]
TID_DROVI8.737e-1448.00Protein tumorous imaginal discs, mitochondrial OS=... [more]
DNJB6_XENTR8.737e-1446.08DnaJ homolog subfamily B member 6 OS=Xenopus tropi... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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