FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_NITOC (Chaperone protein dnaJ OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDP-------AAIFAMLFGSELFEDYIGQLA 488
            +YY+ LGV+  AS+AEIKKAY   A + HPD+NP+D  A ++F+ + EAY VLSD  +R AYD +G +G+   A   P        + F  +FG ++F D  G  A
Sbjct:    5 DYYEALGVARNASDAEIKKAYRRLAMRYHPDRNPDDKAAEEHFKEIQEAYDVLSDARKRTAYDQFGHAGVGAGASAGPGGHGFEGGSNFGDIFG-DVFNDIFGAAA 109          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_METSS (Chaperone protein dnaJ OS=Methylovorus sp. (strain SS1 / DSM 11726) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPA---AIFAMLFGSELFEDYIG 479
            +YY+VLGV+  AS+ EIKK+Y   A K HPD+NP++P A ++F+   EAY+VLSD  +R AYD YG +G+   A   P      FA  FG ++F D  G
Sbjct:    5 DYYEVLGVNRDASDEEIKKSYRKLAMKYHPDRNPDNPKAEESFKEAKEAYEVLSDEQKRAAYDQYGHAGVDPSAGPGPRQGFGNFADAFG-DIFGDIFG 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJA1_DICDI (DnaJ homolog subfamily A member 1 homolog OS=Dictyostelium discoideum GN=dnaja1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.219e-15
Identity = 45/97 (46.39%), Postives = 59/97 (60.82%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKN--PNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAA--IFAMLFGS 455
            MVKE EYY+ LGV P  +E E+KKAY   A K HPDKN  P    A   F+ + EAY+VLSDP +R+ YD+YG  G+        +A  +F+  FG+
Sbjct:    1 MVKEKEYYERLGVKPDCTEDELKKAYRKMAVKYHPDKNQGPGKDAAEAKFKDISEAYEVLSDPEKRKMYDSYGSEGMKESGFHASSAEDLFSHFFGA 97          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_THISH (Chaperone protein dnaJ OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.219e-15
Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG---SELFEDYIGQL 485
            +YY++LGV+  ASEAE+KKA+   A K HPD+NP D  + + F+   EAY++L+DP +R AYD +G +G      +DP+A      G   S++FED  G +
Sbjct:    5 DYYEILGVAKNASEAELKKAFRRLAMKHHPDRNPGDKESEEKFKEAKEAYEILTDPQKRAAYDQFGHAG------VDPSAGGGARGGASFSDIFEDIFGDI 99          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJH_SYNY3 (DnAJ-like protein slr0093 OS=Synechocystis sp. (strain PCC 6803) GN=slr0093 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.219e-15
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGK 392
            +YY +LGV+ TASEAEIKK +   A K HPDKNP D  A + F+ + EAY+VLSDP +RQ YD +G+
Sbjct:    8 DYYQILGVTKTASEAEIKKQFRKLALKYHPDKNPGDKAAEEKFKEISEAYEVLSDPEKRQKYDQFGR 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_THICR (Chaperone protein dnaJ OS=Thiomicrospira crunogena (strain XCL-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.080e-15
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            + + +YY++L VS TASE EIKKAY   A + HPD+NP+D  A   F+   EAY+VLSD  +RQAYD +G +G+   A
Sbjct:    1 MSKRDYYEILEVSATASEGEIKKAYRKLAMRYHPDRNPDDEEAEDKFKEASEAYEVLSDAQKRQAYDQFGHAGVDGSA 78          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PHOLL (Chaperone protein dnaJ OS=Photorhabdus luminescens subsp. laumondii GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.080e-15
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIG 479
            +YY+VLGVS TASE EIKKAY   A K HPD+N  D  A   F+ + EAY++L+D  +R AYD YG +      +    A F+ +FG ++F D  G
Sbjct:    5 DYYEVLGVSKTASEKEIKKAYKRLAMKYHPDRNQGDKEAESQFKEVKEAYEILTDDQKRAAYDQYGHAAFEQGGMGGGGADFSDIFG-DVFGDIFG 99          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SULNB (Chaperone protein dnaJ OS=Sulfurovum sp. (strain NBC37-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI 416
            + E +YY+VL VS   S AE+KKAY   A K HPD+NP+D  A + F+++ EAYQVLSD  +R  YD YGK G+  + +
Sbjct:    1 MSEMDYYEVLEVSRDCSGAELKKAYRKLALKYHPDRNPDDQEAEEKFKIVNEAYQVLSDDEKRTIYDRYGKEGLEGQGM 79          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ALHEH (Chaperone protein dnaJ OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAA--------IFAMLFGSELFEDYIG 479
            + +++YY+ LGV+  AS++EIKKAY   A K HPD+NP D  A   F+   EAY++LSDP +R AYD +G +G+   A +  A          FA +F S++F D  G
Sbjct:    1 MSKSDYYEALGVARNASDSEIKKAYRRMAMKYHPDRNPGDKEAEARFKEAKEAYEILSDPQKRAAYDQFGHAGVDPSAGMGGAGGPGGPGGPDFADIF-SDVFGDIFG 107          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CHRSD (Chaperone protein dnaJ OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 36/78 (46.15%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            + + +YY+VLG+   A + EIKKAY   A+K HPD+NP+D  AA+ F+ + EAY+VL+D  +R AYD +G +G+  +A
Sbjct:    1 MSKRDYYEVLGIERGADQKEIKKAYRRLAQKYHPDRNPDDDTAAEKFREVSEAYEVLTDEEKRSAYDQFGHAGVDGQA 78          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_NITOC7.148e-1642.45Chaperone protein dnaJ OS=Nitrosococcus oceani (st... [more]
DNAJ_METSS7.148e-1646.46Chaperone protein dnaJ OS=Methylovorus sp. (strain... [more]
DNJA1_DICDI1.219e-1546.39DnaJ homolog subfamily A member 1 homolog OS=Dicty... [more]
DNAJ_THISH1.219e-1542.57Chaperone protein dnaJ OS=Thioalkalivibrio sp. (st... [more]
DNAJH_SYNY31.219e-1556.72DnAJ-like protein slr0093 OS=Synechocystis sp. (st... [more]
DNAJ_THICR2.080e-1550.00Chaperone protein dnaJ OS=Thiomicrospira crunogena... [more]
DNAJ_PHOLL2.080e-1545.83Chaperone protein dnaJ OS=Photorhabdus luminescens... [more]
DNAJ_SULNB2.716e-1549.37Chaperone protein dnaJ OS=Sulfurovum sp. (strain N... [more]
DNAJ_ALHEH2.716e-1541.67Chaperone protein dnaJ OS=Alkalilimnicola ehrliche... [more]
DNAJ_CHRSD3.547e-1546.15Chaperone protein dnaJ OS=Chromohalobacter salexig... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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