FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_STRT2 (Chaperone protein dnaJ OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +  TEYYD LG+S  AS+ EIK+AY   ++K HPD N  +P A + ++ + EAY+ LSD  +R AYD YG  G
Sbjct:    1 MNNTEYYDRLGLSKDASQDEIKRAYRKLSKKYHPDIN-KEPGAEEKYKEILEAYETLSDAQKRAAYDQYGPDG 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_STRT1 (Chaperone protein dnaJ OS=Streptococcus thermophilus (strain CNRZ 1066) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +  TEYYD LG+S  AS+ EIK+AY   ++K HPD N  +P A + ++ + EAY+ LSD  +R AYD YG  G
Sbjct:    1 MNNTEYYDRLGLSKDASQDEIKRAYRKLSKKYHPDIN-KEPGAEEKYKEILEAYETLSDAQKRAAYDQYGPDG 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_STRR6 (Chaperone protein dnaJ OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +  TE+YD LGVS  AS  EIKKAY   ++K HPD N  +P A   ++ + EAY+ LSD  +R AYD YG +G
Sbjct:    1 MNNTEFYDRLGVSKNASADEIKKAYRKLSKKYHPDIN-KEPGAEDKYKEVQEAYETLSDDQKRAAYDQYGAAG 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_STRPY (Chaperone protein dnaJ OS=Streptococcus pyogenes GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +  TEYYD LGVS  AS+ +IKKAY   ++K HPD N  +  A Q ++ + EAY+ LSD  +R AYD YG +G
Sbjct:    1 MNNTEYYDRLGVSKDASQDDIKKAYRKMSKKYHPDIN-KEAGAEQKYKDVQEAYETLSDSQKRAAYDQYGAAG 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_STRPN (Chaperone protein dnaJ OS=Streptococcus pneumoniae GN=dnaJ PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +  TE+YD LGVS  AS  EIKKAY   ++K HPD N  +P A   ++ + EAY+ LSD  +R AYD YG +G
Sbjct:    1 MNNTEFYDRLGVSKNASADEIKKAYRKLSKKYHPDIN-KEPGAEDKYKEVQEAYETLSDDQKRAAYDQYGAAG 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_STRP8 (Chaperone protein dnaJ OS=Streptococcus pyogenes serotype M18 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +  TEYYD LGVS  AS+ +IKKAY   ++K HPD N  +  A Q ++ + EAY+ LSD  +R AYD YG +G
Sbjct:    1 MNNTEYYDRLGVSKDASQDDIKKAYRKMSKKYHPDIN-KEAGAEQKYKDVQEAYETLSDSQKRAAYDQYGAAG 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_STRP6 (Chaperone protein dnaJ OS=Streptococcus pyogenes serotype M6 GN=dnaJ PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +  TEYYD LGVS  AS+ +IKKAY   ++K HPD N  +  A Q ++ + EAY+ LSD  +R AYD YG +G
Sbjct:    1 MNNTEYYDRLGVSKDASQDDIKKAYRKMSKKYHPDIN-KEAGAEQKYKDVQEAYETLSDSQKRAAYDQYGAAG 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_STRP3 (Chaperone protein dnaJ OS=Streptococcus pyogenes serotype M3 GN=dnaJ PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +  TEYYD LGVS  AS+ +IKKAY   ++K HPD N  +  A Q ++ + EAY+ LSD  +R AYD YG +G
Sbjct:    1 MNNTEYYDRLGVSKDASQDDIKKAYRKMSKKYHPDIN-KEAGAEQKYKDVQEAYETLSDSQKRAAYDQYGAAG 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_STRP1 (Chaperone protein dnaJ OS=Streptococcus pyogenes serotype M1 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +  TEYYD LGVS  AS+ +IKKAY   ++K HPD N  +  A Q ++ + EAY+ LSD  +R AYD YG +G
Sbjct:    1 MNNTEYYDRLGVSKDASQDDIKKAYRKMSKKYHPDIN-KEAGAEQKYKDVQEAYETLSDSQKRAAYDQYGAAG 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_RHOCS (Chaperone protein dnaJ OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST--EAIIDPAAIFAMLFGS---ELFEDYIGQ 482
            + + +YY+VLGV   AS  ++KKAY   A + HPD+N  D  A Q F+ + EAY VL D  +R AYD +G +            AA F   FGS   ++F++  G+
Sbjct:    1 MSKRDYYEVLGVQKGASADDLKKAYRKLAMQYHPDRNQGDKAAEQKFKEISEAYDVLKDDQKRAAYDRFGHAAFENGRGGPGAGAAGFDFNFGSGFADIFDEMFGE 106          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_STRT23.108e-1147.95Chaperone protein dnaJ OS=Streptococcus thermophil... [more]
DNAJ_STRT13.108e-1147.95Chaperone protein dnaJ OS=Streptococcus thermophil... [more]
DNAJ_STRR63.108e-1149.32Chaperone protein dnaJ OS=Streptococcus pneumoniae... [more]
DNAJ_STRPY3.108e-1149.32Chaperone protein dnaJ OS=Streptococcus pyogenes G... [more]
DNAJ_STRPN3.108e-1149.32Chaperone protein dnaJ OS=Streptococcus pneumoniae... [more]
DNAJ_STRP83.108e-1149.32Chaperone protein dnaJ OS=Streptococcus pyogenes s... [more]
DNAJ_STRP63.108e-1149.32Chaperone protein dnaJ OS=Streptococcus pyogenes s... [more]
DNAJ_STRP33.108e-1149.32Chaperone protein dnaJ OS=Streptococcus pyogenes s... [more]
DNAJ_STRP13.108e-1149.32Chaperone protein dnaJ OS=Streptococcus pyogenes s... [more]
DNAJ_RHOCS3.108e-1137.74Chaperone protein dnaJ OS=Rhodospirillum centenum ... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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