FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEAB (Chaperone protein dnaJ OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDP-----------AAIFAMLFGSELFEDYIG 479
            ++Y+VLGV   ASEA++KKAY   A K HPD+NP D  A   F+   EAY+VLSD ++R AYD YG +G      +DP            A F+ +FG ++F D+ G
Sbjct:    5 DFYEVLGVERGASEADLKKAYRRLAMKYHPDRNPGDKEAEDKFKEANEAYEVLSDASKRAAYDQYGHAG------VDPNMGGGAGAGFGGASFSDIFG-DVFSDFFG 104          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEA8 (Chaperone protein dnaJ OS=Pseudomonas aeruginosa (strain LESB58) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDP-----------AAIFAMLFGSELFEDYIG 479
            ++Y+VLGV   ASEA++KKAY   A K HPD+NP D  A   F+   EAY+VLSD ++R AYD YG +G      +DP            A F+ +FG ++F D+ G
Sbjct:    5 DFYEVLGVERGASEADLKKAYRRLAMKYHPDRNPGDKEAEDKFKEANEAYEVLSDASKRAAYDQYGHAG------VDPNMGGGAGAGFGGASFSDIFG-DVFSDFFG 104          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEA7 (Chaperone protein dnaJ OS=Pseudomonas aeruginosa (strain PA7) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDP-----------AAIFAMLFGSELFEDYIG 479
            ++Y+VLGV   ASEA++KKAY   A K HPD+NP D  A   F+   EAY+VLSD ++R AYD YG +G      +DP            A F+ +FG ++F D+ G
Sbjct:    5 DFYEVLGVERGASEADLKKAYRRLAMKYHPDRNPGDKEAEDKFKEANEAYEVLSDASKRAAYDQYGHAG------VDPNMGGGAGAGFGGASFSDIFG-DVFSDFFG 104          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURM1 (Chaperone protein dnaJ OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV+  AS+ EIKKAY   A K HPD+NP++  A ++F+ + EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDNKDAEEHFKEVKEAYEMLSDSQKRAAYDQYGHAGVDPNMGGAGAQGFGGFADAFG-DIFGDIFGQAA 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEPW (Chaperone protein dnaJ OS=Pseudomonas putida (strain W619) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPA----------AIFAMLFGSELFEDYIG 479
            + + +YY+VLGV   ASEA++KKAY   A K HPD+NP D  +   F+   EAY+VLSD ++R A+D YG +G      +DP+          A F+ +FG ++F D+ G
Sbjct:    1 MSKRDYYEVLGVERGASEADLKKAYRRLAMKYHPDRNPGDKESEDKFKEANEAYEVLSDASKRAAFDQYGHAG------VDPSMGGGGAGFGGANFSDIFG-DVFSDFFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEPG (Chaperone protein dnaJ OS=Pseudomonas putida (strain GB-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPA----------AIFAMLFGSELFEDYIG 479
            + + +YY+VLGV   ASEA++KKAY   A K HPD+NP D  +   F+   EAY+VLSD ++R A+D YG +G      +DP+          A F+ +FG ++F D+ G
Sbjct:    1 MSKRDYYEVLGVERGASEADLKKAYRRLAMKYHPDRNPGDKESEDKFKEANEAYEVLSDASKRAAFDQYGHAG------VDPSMGGGGAGFGGANFSDIFG-DVFSDFFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_MARMS (Chaperone protein dnaJ OS=Marinomonas sp. (strain MWYL1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            + + +YYDVLGV+  A + +IKKAY   A K HPDKNP++P A   F+ L EAY++LS   +R AYD +G  G++ +A
Sbjct:    1 MSKRDYYDVLGVAKDADKKDIKKAYRSLANKYHPDKNPDNPEALDKFKELAEAYEILSSDDKRAAYDRFGHDGVNGQA 78          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPIN (Chaperone protein dnaJ OS=Leptospira interrogans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            + E  YYD+LGVS +A++ EIK AY   A K HPDKN  +  + + F+   EAY++L DP +RQAYD +GK+G+S
Sbjct:    1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVS 75          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPIC (Chaperone protein dnaJ OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            + E  YYD+LGVS +A++ EIK AY   A K HPDKN  +  + + F+   EAY++L DP +RQAYD +GK+G+S
Sbjct:    1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVS 75          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIF5 (Chaperone protein dnaJ OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            +YY+VL +S TA + EIKK+Y   A + HPD+NP+D  A + F+ +  AY+VLSDP +RQAYD +G +G++
Sbjct:    5 DYYEVLEISRTADDGEIKKSYRRLAMRYHPDRNPDDASAEERFKEISAAYEVLSDPQKRQAYDRFGHAGVN 75          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_PSEAB4.633e-1542.99Chaperone protein dnaJ OS=Pseudomonas aeruginosa (... [more]
DNAJ_PSEA84.633e-1542.99Chaperone protein dnaJ OS=Pseudomonas aeruginosa (... [more]
DNAJ_PSEA74.633e-1542.99Chaperone protein dnaJ OS=Pseudomonas aeruginosa (... [more]
DNAJ_BURM14.633e-1545.10Chaperone protein dnaJ OS=Burkholderia multivorans... [more]
DNAJ_PSEPW6.051e-1540.91Chaperone protein dnaJ OS=Pseudomonas putida (stra... [more]
DNAJ_PSEPG6.051e-1540.91Chaperone protein dnaJ OS=Pseudomonas putida (stra... [more]
DNAJ_MARMS6.051e-1547.44Chaperone protein dnaJ OS=Marinomonas sp. (strain ... [more]
DNAJ_LEPIN7.903e-1549.33Chaperone protein dnaJ OS=Leptospira interrogans G... [more]
DNAJ_LEPIC7.903e-1549.33Chaperone protein dnaJ OS=Leptospira interrogans s... [more]
DNAJ_ACIF57.903e-1549.30Chaperone protein dnaJ OS=Acidithiobacillus ferroo... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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