FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURTA (Chaperone protein dnaJ OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV+  AS+ EIKKAY   A K HPD+NP+   A ++F+   EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDSQKRAAYDQYGHAGVDPNMGAAGAQGFGGFADAFG-DIFGDIFGQAA 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SACD2 (Chaperone protein dnaJ OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 44/103 (42.72%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIID---PAAIFAMLFGSELFEDYIG 479
            + + +YY+VLGVS   S  E+KKAY   A K HPD+N +DP +   F+   EAY+VLSD  +R AYD YG +G+   A +     A  F+ +FG ++F D  G
Sbjct:    1 MSKRDYYEVLGVSKDVSPQELKKAYRKVAMKYHPDRNSDDPNSEDKFKEASEAYEVLSDAQKRAAYDQYGHAGVDGNAGMGGGAGAGNFSDIFG-DVFGDIFG 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_RHIEC (Chaperone protein dnaJ OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIGQL 485
            + ++Y+ LGV+ +A E E+K A+   A K HPDKNP+D  A + F+ + EAY++L DP +R AYD YG +      +      FA    S++FED  G++
Sbjct:    3 KADFYETLGVAKSADEKELKSAFRKLAMKYHPDKNPDDKEAERKFKEINEAYEMLKDPQKRAAYDRYGHAAFEHGGMGGGGGGFAGGGFSDIFEDIFGEM 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_RALME (Chaperone protein dnaJ OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIID------PAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV   AS+ EIKKAY   A K HPD+NP++  A + F+ + EAY++LSDP ++ AYD YG +G+                 FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVGKNASDDEIKKAYRKLAMKHHPDRNPDNKEAEEKFKEVKEAYEMLSDPEKKAAYDQYGHAGVDPNMAGGFGGGGFGGGGFAEAFG-DIFGDIFGQAA 108          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEU2 (Chaperone protein dnaJ OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPA-------------AIFAMLFGSELFEDYIG 479
            +YY+VLGV   +SEA++KKAY   A K HPD+NP+D  + + F+   EAY+VLSD ++R AYD YG +G      +DP+             A F+ +FG ++F D+ G
Sbjct:    5 DYYEVLGVERGSSEADLKKAYRRLAMKHHPDRNPDDKASEELFKEANEAYEVLSDASKRAAYDQYGHAG------VDPSMGGGGGFGGGAGGANFSDIFG-DVFSDFFG 106          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEPK (Chaperone protein dnaJ OS=Pseudomonas putida (strain KT2440) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPA----------AIFAMLFGSELFEDYIG 479
            + + +YY+VLGV   A+EA++KKAY   A K HPD+NP D  +   F+   EAY+VLSD ++R A+D YG +G      +DP+          A F+ +FG ++F D+ G
Sbjct:    1 MSKRDYYEVLGVERGATEADLKKAYRRLAMKYHPDRNPGDKESEDKFKEANEAYEVLSDASKRAAFDQYGHAG------VDPSMGGGGAGFGGANFSDIFG-DVFSDFFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEP1 (Chaperone protein dnaJ OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPA----------AIFAMLFGSELFEDYIG 479
            + + +YY+VLGV   A+EA++KKAY   A K HPD+NP D  +   F+   EAY+VLSD ++R A+D YG +G      +DP+          A F+ +FG ++F D+ G
Sbjct:    1 MSKRDYYEVLGVERGATEADLKKAYRRLAMKYHPDRNPGDKESEDKFKEANEAYEVLSDASKRAAFDQYGHAG------VDPSMGGGGAGFGGANFSDIFG-DVFSDFFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSE14 (Chaperone protein dnaJ OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPA-------------AIFAMLFGSELFEDYIG 479
            +YY+VLGV   +SEA++KKAY   A K HPD+NP+D  + + F+   EAY+VLSD ++R AYD YG +G      +DP+             A F+ +FG ++F D+ G
Sbjct:    5 DYYEVLGVERGSSEADLKKAYRRLAMKHHPDRNPDDKASEELFKEANEAYEVLSDASKRAAYDQYGHAG------VDPSMGGGGGFGGGAGGANFSDIFG-DVFSDFFG 106          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_NITSB (Chaperone protein dnaJ OS=Nitratiruptor sp. (strain SB155-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE 410
            + +YY++L V   AS  EIKKAY   A K HPD+NP++P A + F+++ EAYQVLSD  +R  YD YGK+G+  +
Sbjct:    3 DIDYYELLEVDRNASFEEIKKAYRKLALKYHPDRNPDNPEAEEKFKLINEAYQVLSDEEKRALYDQYGKAGLENQ 77          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPBL (Chaperone protein dnaJ OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            + E  YYD+LGVS +A++ EIK AY   A K HPDKN  +  + + F+   EAY++L DP +RQAYD +GK+G+   A
Sbjct:    1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVGAGA 78          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_BURTA1.032e-1445.10Chaperone protein dnaJ OS=Burkholderia thailandens... [more]
DNAJ_SACD21.348e-1442.72Chaperone protein dnaJ OS=Saccharophagus degradans... [more]
DNAJ_RHIEC1.348e-1439.00Chaperone protein dnaJ OS=Rhizobium etli (strain C... [more]
DNAJ_RALME1.348e-1442.86Chaperone protein dnaJ OS=Ralstonia metallidurans ... [more]
DNAJ_PSEU21.348e-1441.28Chaperone protein dnaJ OS=Pseudomonas syringae pv.... [more]
DNAJ_PSEPK1.348e-1440.00Chaperone protein dnaJ OS=Pseudomonas putida (stra... [more]
DNAJ_PSEP11.348e-1440.00Chaperone protein dnaJ OS=Pseudomonas putida (stra... [more]
DNAJ_PSE141.348e-1441.28Chaperone protein dnaJ OS=Pseudomonas syringae pv.... [more]
DNAJ_NITSB1.348e-1449.33Chaperone protein dnaJ OS=Nitratiruptor sp. (strai... [more]
DNAJ_LEPBL1.348e-1447.44Chaperone protein dnaJ OS=Leptospira borgpeterseni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
back to top