FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPBJ (Chaperone protein dnaJ OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            + E  YYD+LGVS +A++ EIK AY   A K HPDKN  +  + + F+   EAY++L DP +RQAYD +GK+G+   A
Sbjct:    1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVGAGA 78          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_EHRRW (Chaperone protein dnaJ OS=Ehrlichia ruminantium (strain Welgevonden) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            + +++YYD+LG+S  A+  EIKKAY   A K HPDKNP D  A + F+ L EAY VL D  +R AYD YG S  S
Sbjct:    1 MSKSDYYDLLGLSKNATPEEIKKAYRKMALKYHPDKNPGDKAAEEKFKELSEAYDVLIDKDKRAAYDRYGHSAFS 75          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_EHRRG (Chaperone protein dnaJ OS=Ehrlichia ruminantium (strain Gardel) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            + +++YYD+LG+S  A+  EIKKAY   A K HPDKNP D  A + F+ L EAY VL D  +R AYD YG S  S
Sbjct:    1 MSKSDYYDLLGLSKNATPEEIKKAYRKMALKYHPDKNPGDKAAEEKFKELSEAYDVLIDKDKRAAYDRYGHSAFS 75          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURPS (Chaperone protein dnaJ OS=Burkholderia pseudomallei GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV+  AS+ EIKKAY   A K HPD+NP+   A ++F+   EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYGHAGVDPNVGAAGAQGFGGFADAFG-DIFGDIFGQAA 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURP6 (Chaperone protein dnaJ OS=Burkholderia pseudomallei (strain 668) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV+  AS+ EIKKAY   A K HPD+NP+   A ++F+   EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYGHAGVDPNVGAAGAQGFGGFADAFG-DIFGDIFGQAA 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURP1 (Chaperone protein dnaJ OS=Burkholderia pseudomallei (strain 1710b) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV+  AS+ EIKKAY   A K HPD+NP+   A ++F+   EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYGHAGVDPNVGAAGAQGFGGFADAFG-DIFGDIFGQAA 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURP0 (Chaperone protein dnaJ OS=Burkholderia pseudomallei (strain 1106a) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV+  AS+ EIKKAY   A K HPD+NP+   A ++F+   EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYGHAGVDPNVGAAGAQGFGGFADAFG-DIFGDIFGQAA 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURMS (Chaperone protein dnaJ OS=Burkholderia mallei (strain SAVP1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV+  AS+ EIKKAY   A K HPD+NP+   A ++F+   EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYGHAGVDPNVGAAGAQGFGGFADAFG-DIFGDIFGQAA 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURMA (Chaperone protein dnaJ OS=Burkholderia mallei GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV+  AS+ EIKKAY   A K HPD+NP+   A ++F+   EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYGHAGVDPNVGAAGAQGFGGFADAFG-DIFGDIFGQAA 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BURM9 (Chaperone protein dnaJ OS=Burkholderia mallei (strain NCTC 10229) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV+  AS+ EIKKAY   A K HPD+NP+   A ++F+   EAY++LSD  +R AYD YG +G+      A       FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDSKDAEEHFKEAKEAYEMLSDGQKRAAYDQYGHAGVDPNVGAAGAQGFGGFADAFG-DIFGDIFGQAA 105          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_LEPBJ1.348e-1447.44Chaperone protein dnaJ OS=Leptospira borgpeterseni... [more]
DNAJ_EHRRW1.348e-1452.00Chaperone protein dnaJ OS=Ehrlichia ruminantium (s... [more]
DNAJ_EHRRG1.348e-1452.00Chaperone protein dnaJ OS=Ehrlichia ruminantium (s... [more]
DNAJ_BURPS1.348e-1445.10Chaperone protein dnaJ OS=Burkholderia pseudomalle... [more]
DNAJ_BURP61.348e-1445.10Chaperone protein dnaJ OS=Burkholderia pseudomalle... [more]
DNAJ_BURP11.348e-1445.10Chaperone protein dnaJ OS=Burkholderia pseudomalle... [more]
DNAJ_BURP01.348e-1445.10Chaperone protein dnaJ OS=Burkholderia pseudomalle... [more]
DNAJ_BURMS1.348e-1445.10Chaperone protein dnaJ OS=Burkholderia mallei (str... [more]
DNAJ_BURMA1.348e-1445.10Chaperone protein dnaJ OS=Burkholderia mallei GN=d... [more]
DNAJ_BURM91.348e-1445.10Chaperone protein dnaJ OS=Burkholderia mallei (str... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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