FC920417

Overview
NameFC920417
Unique NameFC920417
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920417_ssr32 microsatellite FC920417_ssr32:32..59. BLAST: Citrus ESTs to Prunus persica proteins V1
FC920417_ssr210 microsatellite FC920417_ssr210:210..219. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: ROA2_MOUSE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus GN=Hnrnpa2b1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 34/90 (37.78%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  414 KKLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFASAEDAKTALSAE-HFLGSRMLEVKIATPKEEMRAPPRKVS 680
            +KL + G+ ++   + LR Y  ++G L DCVVM++ ++ RSRGFG+VTF+S  +   A++A  H +  R++E K A  +EE   P   V+
Sbjct:   21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVT 110          
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: ROA2_HUMAN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 34/90 (37.78%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  414 KKLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFASAEDAKTALSAE-HFLGSRMLEVKIATPKEEMRAPPRKVS 680
            +KL + G+ ++   + LR Y  ++G L DCVVM++ ++ RSRGFG+VTF+S  +   A++A  H +  R++E K A  +EE   P   V+
Sbjct:   21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVT 110          
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: ROA2_BOVIN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus GN=HNRNPA2B1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 34/90 (37.78%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  414 KKLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFASAEDAKTALSAE-HFLGSRMLEVKIATPKEEMRAPPRKVS 680
            +KL + G+ ++   + LR Y  ++G L DCVVM++ ++ RSRGFG+VTF+S  +   A++A  H +  R++E K A  +EE   P   V+
Sbjct:    9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVT 98          
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 3
Query:  417 KLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFASAEDAKTAL-SAEHFLGSRMLEVKIATPK 647
            KL V G+ W+   + L  Y  +FGD+ DCVVMK   +GRSRGFG+VTFA   +    L +  H L  R ++ K   P+
Sbjct:    8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPR 85          
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: ROA2_SAGOE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus GN=HNRNPA2B1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 3
Query:  414 KKLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFASAEDAKTALSAE-HFLGSRMLEVKIATPKEEMRAPPRKVS 680
            +KL + G+ +    + LR Y  ++G L DCVVM++ ++ RSRGFG+VTF+S  +   A++A  H +  R++E K A  +EE   P   V+
Sbjct:    9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVT 98          
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: ROA1_MACMU (Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 32/85 (37.65%), Postives = 55/85 (64.71%), Query Frame = 3
Query:  414 KKLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFASAEDAKTALSAE-HFLGSRMLEVKIATPKEEMRAP 665
            +KL + G+ ++   + LR +  ++G L DCVVM++ +T RSRGFG+VT+A+ E    A++A  H +  R++E K A  +E+ + P
Sbjct:   14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98          
The following BLAST results are available for this feature:
BLAST of FC920417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
ROA2_MOUSE4.663e-1137.78Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_HUMAN4.663e-1137.78Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_BOVIN4.663e-1137.78Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
RB27C_DROME4.663e-1142.31Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]
ROA2_SAGOE7.954e-1137.78Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA1_MACMU7.954e-1137.65Heterogeneous nuclear ribonucleoprotein A1 OS=Maca... [more]

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Properties
Property NameValue
Genbank descriptionC32008B04EF RVDevelop1 Citrus clementina cDNA clone C32008B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920417 ID=FC920417; Name=FC920417; organism=Citrus clementina; type=EST; length=680bp
GATTGCTAGATAGAGGTAGGAAGAGGATTTTAGAGAGAGAGAGAGAGAGA
GAGAGAGAGGTCGATGCATTAGGGTTTTGAAAATCGGACCACAGATTCGA
TAAAGGTCAGTGAGCGCGCAATCTCCATTCAATTGATTGATTTTAATTTT
AATTTTAGAGGACAATTAAAAAAAAAATGGTGAGTTTGATGATTTGGCAT
TTGATGAATTGTGTGTGTGAGAAAGAGGTGTACTTTACATGTGCAGGAGG
AGGAATCGAGTGTGTTACTGGGAAGAAGAGAGATAGAGAGAAAATTGTAG
TGATTTGAGTGCTCGAGAACTGAGTTGTTTGAGCGTTAGGGGTTTTCCCC
TTTTCCTCATCTCTCCCTCTGTAGCCGCTTCTTTCATTTTTCCAGCTTTC
AATTCTCATGGAGAAAAAGCTTGTGGTTCTGGGTATTCCATGGGATGTCG
ATACAGATGGTTTAAGAGAGTACATGAGCAAATTTGGGGATTTGGAGGAC
TGCGTTGTCATGAAGGAGCGGTCCACAGGGCGATCGCGTGGATTTGGCTA
TGTTACATTTGCATCTGCTGAAGATGCTAAGACAGCTTTGTCAGCTGAGC
ACTTTCTTGGCAGCAGAATGCTAGAAGTTAAAATAGCTACCCCTAAGGAG
GAGATGAGAGCACCCCCAAGGAAAGTGTCC
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