FC920420

Overview
NameFC920420
Unique NameFC920420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14651 contig Ccv1_Contig14651:7..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920420 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.163e-19
Identity = 37/108 (34.26%), Postives = 60/108 (55.56%), Query Frame = 3 
Query:   81 KERFYSSAGQGISVKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK--QVDVGISTDGHTLLADQVKIIAAIKEAGNVKEIL 398
            K R     G G   +F  +AS+  G+PTF+LVR   +S PSK+ ++  F++ G  ++ G + + E + K +K  ++DV IS  G   L DQ+ ++ AIK    +K  L
Sbjct:   12 KNRTLVVGGTGFIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFL 118

HSP 2 Score: 54.299 bits (129), Expect = 3.163e-19
Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:  382 TLKRFLPSEFGNDVDRVEGAV*PTKSTYDVKAKIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPEATAPPRD 597
            T+KRFLPSEFG+DVDR +  V P  + Y  K  +RRAVE  GIP+T +       +   +   P    PP D
Sbjct:  113 TIKRFLPSEFGHDVDRTD-PVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMD 183
The following BLAST results are available for this feature:
BLAST of FC920420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN3.163e-1934.26Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

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Properties
Property NameValue
Genbank descriptionC32008B07EF RVDevelop1 Citrus clementina cDNA clone C32008B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920420 ID=FC920420; Name=FC920420; organism=Citrus clementina; type=EST; length=598bp
GATCCATTTGATCATTTCAAAACAAAACGAAAAAAAAAATCTCAGTAATT
GAACTGAACGAGTCTCAGAAATGGCATCGAAAAGAAAGATTCTATTCATC
GGCGGGACAGGGTATATCGGTGAAATTCACTGTCGAAGCGAGCGTAAAAG
CCGGCCACCCGACGTTCGTGCTCGTGAGAGAATCCACAATCTCTGGTCCT
TCCAAATCTCAACTCCTCGATCACTTCAAAAACCTCGGCGTCAATCTCGT
CATAGGAGATGTGTTGAATCACGAGAGTTTGGTGAAGGCGATTAAACAAG
TGGACGTGGGGATATCAACGGACGGTCACACTTTATTAGCTGATCAGGTC
AAGATTATTGCTGCCATTAAAGAAGCCGGTAACGTTAAAGAGATTCTTAC
CATCGGAATTTGGAAATGATGTTGATCGAGTCGAAGGCGCCGTATAGCCA
ACAAAATCGACGTATGACGTAAAGGCGAAAATCCGCCGAGCCGTTGAGGC
AGAAGGCATTCCGTACACTTACGTAGAATCTTATTGTTTTGATGGCTATT
TCCTCCCCAATTTGTTGCAGCCTGAGGCCACTGCCCCCCCTAGGGATA
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