FC920459

Overview
NameFC920459
Unique NameFC920459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_GEOSL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacter sulfurreducens GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 71/201 (35.32%), Postives = 104/201 (51.74%), Query Frame = 2
Query:   89 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKI-RYAGMLQYDGELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGI-TFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAV 682
            D+++ P VI   NG  +G + DGD  + FNFR+DR   + +AL    F  FDR  +P++  Y  + +YD    LP  Y   PPE +    G+ +   G+R    +ET K+ HVTFF+NG     F    EE + IPS   + T++ +P+M A  + +   K I             N+DMVGHTG ++A V A +  DE V
Sbjct:  229 DEFVEPAVIAP-NGSPLGLLADGDGFICFNFRSDRAREITRALTDPAFAGFDRSPWPRLASYVCLTEYDATFPLPVAY---PPESLANILGQVVSRAGLRQLRIAETEKYAHVTFFFNGGVEEPFPG--EERILIPSPKEVATYDQKPEMSAPLVTDALLKRIDEGVDDVVVVNFANADMVGHTGILDAAVRAIETVDECV 423          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_HERA2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.655e-22
Identity = 73/249 (29.32%), Postives = 112/249 (44.98%), Query Frame = 2
Query:   29 HKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR----------VRFP-----------KIRYAGMLQYDGE----LKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            H     + A+++   +    D+++   VI D  G A+  I  GD V+ FNFRADR+  + +AL   D +   +          ++ P            + Y  M QYD      +  P HY+  P        + +   G R +  +ET K+ HVTFF NG R   F    E+ V   S    T+++QP+M A E+A +   A+ S+ +        N DMVGHTG I A V AC+  D  +  ++ A
Sbjct:  212 HTASDPISAIEQAYLRDARGDEFIEATVITDSAGVALPRISTGDVVICFNFRADRVRQITRALMQSDLNTMIQEWYANQAEQGLQLPTTIWQRPEQVSNLHYVTMTQYDATFPYAIAYPPHYITEP------LAKVIADAGKRQYHSAETEKYPHVTFFLNGRREEPFAG--EDRVMAASPKVATYDLQPEMSAEEVAAKLLDAVNSQIYDFLVVNFANPDMVGHTGVIPAVVKACETVDRCLGQVVPA 452          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_RHOBA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodopirellula baltica GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 74/235 (31.49%), Postives = 115/235 (48.94%), Query Frame = 2
Query:   35 FKSAVEAVKKLREQPNAN----DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDF-------DKFDR-VRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGI-TFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            F SA  A++     P  +    D+++    IV E G  +  +  GDAV+  N+R DR   + KA  ++D          FDR  +   + +A M  Y+  L +   +   P ++    GEY+   G+  F C+ET K+ HVTFF+N  R   F+   EE+   PS   + T++ +P+M A +I E+  K I S +         N DMVGHTG +EA + A +  D  V  ++DA
Sbjct:  226 FPSASAAIESYYANPTESSRDGDEFITASSIVPEGGSPI-TVQPGDAVLFMNYRGDRTREITKAFTFDDAAWKDIPGGGFDRGKKIDNLYFATMTGYETGLPVKVIF-EKPAKMPNILGEYVASKGLHQFRCAETEKYPHVTFFFNDYRDNPFEE--EEWGMAPSPRDVSTYDQKPEMSAEDITEKVLKQIKSGKCDMIIVNYANGDMVGHTGVLEAAIKAVEKVDACVGRVVDA 456          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_MYCMS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma mycoides subsp. mycoides SC GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 68/219 (31.05%), Postives = 109/219 (49.77%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFP-------KIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEE---------YVE-IPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDI 691
            ++  +P F   D NG     +   DA++  NFR DR + ++  L  +++  +    F        KIR+  M++Y   +  P H    P  +  T G+YL   G++    +ET K  HVTFF++G    YF + L +         Y++ IPS    T++++P+M A+EI ++  + I    F        N DMVGHTG+ +AT +ACK  DE +K I
Sbjct:  233 DEMIIPAFNQDDLNGN----LKANDAIIMTNFRPDRAIQISSILTNKNYIAWQNEAFSDAEFIGDKIRFVSMMKYSDSVTSP-HIAYPPKPLTNTLGQYLSQLGLKQLRIAETEKIAHVTFFFDGGND-YFKNGLAKNDEITLANAYIDLIPSAKVATYDLKPQMSAVEITDKLLEEIKKDEFDFIVLNFANCDMVGHTGNNKATEIACKTLDEQLKRI 445          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_FLAPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 70/225 (31.11%), Postives = 110/225 (48.89%), Query Frame = 2
Query:   32 KFKSAVEAVKKLRE--QPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            K K + +AV  +    Q N  D+++ P ++ D+N   +  I + D V+ FNFR DR   L +AL  +DF + +  +   + Y  +  YD   K     + +   I +T GE L   G +    +ET K+ HVTFF++G R   F    E  +   S    T+++QP+M A E+ E     I             N DMVGHTG + A + AC+A ++ V+ +I A
Sbjct:  207 KGKPSQDAVLSISNSYQNNITDEFIEPIIMTDDNNNPIATIQEDDVVIFFNFRTDRGRELTEALSQQDFHEQNMHKL-NLYYVTLTNYDETYK-NVKVIYNKDNITQTLGEVLEKAGKKQIRIAETEKYPHVTFFFSGGREQPFLG--ESRILKNSPKVATYDLQPEMSAYELTEALIPEIEKTEADFICLNFANGDMVGHTGIMSAAIKACQAVNKCVEKVITA 427          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 7424) GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 69/215 (32.09%), Postives = 101/215 (46.98%), Query Frame = 2
Query:   38 KSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAV 682
            +SA + +K    Q   ++  LP  V       A G I  GD ++ +NFR DR   L  A    DFD F+R     + +    QYD   KLP   +  P  +    GE +   G+R F  +ET K+ HVT+F+NG     F+    E ++ P  +  T++  P M A  + + A  AI    +        N DMVGHTG++EA V A +A D  +
Sbjct:  217 RSASQILKDFYAQDITDEFILPTRV-------APGAIEPGDGIIFYNFRPDRARQLCYAFTMPDFDGFERDLIQPLSFVTFTQYDP--KLPVKVVFEPQSLTNILGEVIAKKGLRQFRTAETEKYPHVTYFFNGGLEQPFEGEDRELIQSPMVA--TYDKAPVMSAEAVTDTACAAIKKGIYSLVVMNYANPDMVGHTGNMEAAVQAIEAVDRCL 420          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_NOSP7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.235e-22
Identity = 67/221 (30.32%), Postives = 107/221 (48.42%), Query Frame = 2
Query:   38 KSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ++AVE ++    +    D+++ P  I      A G I  GD V+ FNFR DR   L +AL    F+ F+R +   + +    QYD +  LP      P  +    GE + ++G+  F  +ET K+ HVT+F+NG     F     E V  P  +  T++  P M A+ + + A  AI    +        N DMVGHTG I+AT+ A +  D  +  ++++
Sbjct:  217 RTAVEILQASYAE-GVKDEFVNPIRI------APGAIEPGDGVIFFNFRPDRSRQLTQALVSPTFNGFERQQITPLSFVTFTQYDSD--LPVAVAFEPQNLSNILGEVIANHGLNQFRTAETEKYAHVTYFFNGGLEEPFAGEDRELVSSPMVA--TYDHAPAMSAVAVTDVAIAAIQKGTYSLVVINYANPDMVGHTGQIDATITAIETVDRCLGRLLES 426          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_MYCCT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=gpmI PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.235e-22
Identity = 69/221 (31.22%), Postives = 111/221 (50.23%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDF-----DKFDRVRF--PKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEE---------YVE-IPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIID 697
            ++  +P F   D NG     +   DA++  NFR DR + ++  L  +++     + F    F   KIR+  M++Y   +  P H    P  +  T G+YL   G++    +ET K  HVTFF++G    YF + L +         Y++ IPS    T++++P+M A+EI ++  + I    F        N DMVGHTG+ +AT +ACK  D+ +K I D
Sbjct:  233 DEMIIPAFNQDDFNGN----LKANDAIIMTNFRPDRAIQISSILTNKNYIAWQSEAFSDAEFIGDKIRFVSMMKYSDSVTSP-HIAYPPKPLTNTLGQYLSKLGLKQLRIAETEKIAHVTFFFDGGND-YFKNGLAKNDEITLANAYIDLIPSAKVATYDLKPQMSAVEITDKLLEEIKKDEFDFIVLNFANCDMVGHTGNNKATEIACKTLDDQLKRIHD 447          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_RHOPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodopseudomonas palustris GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.143e-22
Identity = 68/206 (33.01%), Postives = 102/206 (49.51%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYA-GMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ND+++ P VI D  G       DGD V+ FNFRADR+  +  AL    F  F R +  +I  A GM QY   L      +  P  +    G+ +   G+     +ET K+ HVT+F NG     +    E+ + +PS    T+++QP+M A E+ ++A  AI S ++        N DMVGHTG + A + A +  D  +  I+ A
Sbjct:  227 NDEFIVPAVIGDYQGMR-----DGDGVLCFNFRADRVREILAALLDSAFAGFPRKQVKQIAAAAGMTQYSTALDALMGTIFPPQSLVNGLGQVVADAGLHQLRMAETEKYPHVTYFLNGGEEVPYPG--EDRIMVPSPKVATYDLQPEMSAPELGDKAVAAIESGKYDLIVLNFANPDMVGHTGSLPAAIKAVETVDTQLGHIVAA 425          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_PSYA2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.143e-22
Identity = 74/230 (32.17%), Postives = 116/230 (50.43%), Query Frame = 2
Query:   20 RHSHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYED--FDKFDRVRFPKI-------RYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAV 682
            R S +   AV+A  K RE     D+++ P V++  + +    + D DA++  NFRADR   LA+A    D  F  F R + PK+       +Y+ +L  + +  +  +    P  +  T GEYL   G      +ET K+ HVTFF++G R   +    E  + +PS    T+++QP+M A E+ ++  +AI S ++        N DMVGHTG  +A V A +A D  V
Sbjct:  244 RLSTRADGAVQAAYKARE----TDEFINPTVVIGRD-EVPYTVDDNDALIFMNFRADRARELAQAFVLPDHEFSGFARNKQPKLAAFVMLTKYSDVLADNPKTSIAYY----PTSLTNTLGEYLQSKGKTQLRIAETEKYAHVTFFFSGGREDEYKG--ETRILVPSPDVATYDLQPEMSAPEVTDKLVEAIESGQYDVLVVNYANGDMVGHTGIFDAAVQAVEALDVCV 462          
The following BLAST results are available for this feature:
BLAST of FC920459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_GEOSL2.799e-2235.322,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HERA23.655e-2229.322,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOBA4.774e-2231.492,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCMS4.774e-2231.052,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FLAPJ4.774e-2231.112,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CYAP74.774e-2232.092,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_NOSP76.235e-2230.322,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCCT6.235e-2231.222,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOPA8.143e-2233.012,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSYA28.143e-2232.172,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC32008F09EF RVDevelop1 Citrus clementina cDNA clone C32008F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920459 ID=FC920459; Name=FC920459; organism=Citrus clementina; type=EST; length=701bp
GGGATGCCCAAGTTCTTGGAGACACTCACACAAGTTTAAGAGCGCCGTTG
AAGCTGTCAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTA
CCTCCATTTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGT
AGATGGTGATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTA
TGCTTGCTAAGGCCCTTGAATATGAAGATTTTGACAAATTTGATCGAGTT
CGGTTCCCTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTT
GAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGACAGAACAT
CTGGTGAATATTTAGTGCATAATGGTGTCCGTACTTTTGCTTGCAGTGAG
ACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACCGCTCTGG
GTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGTGATTCTG
GAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAG
AGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGGTACGTGTTA
CCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAAGATATCATTGATGCA
A
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