FC920476

Overview
NameFC920476
Unique NameFC920476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length753
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920476_ssr40 microsatellite FC920476_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9360 contig Ccv1_Contig9360:1..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920476 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.088e-22
Identity = 60/135 (44.44%), Postives = 79/135 (58.52%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRI 672
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G     NLV A  ++A    ++VL+G  E YR+
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAIWACQVVLMGFVEGYRV 176          
BLAST of FC920476 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.088e-22
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 672
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + AV A ++VL+G  E YR+
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRV 176          
BLAST of FC920476 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.258e-22
Identity = 65/157 (41.40%), Postives = 85/157 (54.14%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT---TVWIGGQAHP--VVI*PLGLA 732
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F+K +A E+IH RWAMLGA G I PE   K+      E VWFK G+ +     L+Y G    +    + AV+  ++VL+G  E +RI     V  G   +P      PLGLA
Sbjct:   47 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLA 200          
BLAST of FC920476 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21
Identity = 59/138 (42.75%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  340 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITTVWIGGQAHPVV----I*PLGLA 732
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+ WAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YRI    +G    P+       PLGLA
Sbjct:    5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLA 141          
BLAST of FC920476 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.837e-21
Identity = 62/157 (39.49%), Postives = 85/157 (54.14%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT---TVWIGGQAHP--VVI*PLGLA 732
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F++ +A E+IH RWAMLGA G + PE   K+      E VWFK G+ +     L+Y G    +    + AV+  +++L+G  E +RI     V  G   +P      PLGLA
Sbjct:   50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLA 203          
BLAST of FC920476 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 61/158 (38.61%), Postives = 82/158 (51.90%), Query Frame = 1
Query:  283 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITTVWIGGQAHPV----VI*PLGLA 732
            ++YGPD       G   + + P   TGE PGDYG+D  GLS  P+ F +Y+  ELIHAR  +LGA G + PE   ++ G   G  A+WFK GA +     LNY G    I   N+V  +  ++VL+G  E YR+     G    P+       PLGLA
Sbjct:   56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLA 209          
BLAST of FC920476 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.251e-18
Identity = 59/155 (38.06%), Postives = 83/155 (53.55%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITTVWIGGQAHPVVI----*PLGL 729
            WYG DR ++L  G L  S  P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWA+    G + PE   + G   G E VWFK G+ +     L++ G    +    + A+ A ++VL+G  E Y +    +G    P+ +     PLGL
Sbjct:   48 WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGL 198          
BLAST of FC920476 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.210e-18
Identity = 52/126 (41.27%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  340 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV-IAEIVLVGGAEYYRITTVWIGGQAHPV 708
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+R AM  A G I PE  +  G   G EAVWFK GA +     L+Y G    +    + A+   +++L+G  E YRI    +G    P+
Sbjct:   68 EWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPL 192          
BLAST of FC920476 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.059e-17
Identity = 61/156 (39.10%), Postives = 80/156 (51.28%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITTVWIGGQAHPVV----I*PLGLA 732
            WYGPDR  +L        E P YLTGE          GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A +++L+G  E YRI    +G    P+       PLGLA
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLA 191          
BLAST of FC920476 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.442e-14
Identity = 47/122 (38.52%), Postives = 60/122 (49.18%), Query Frame = 1
Query:  295 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 660
            PDR ++ P      S  P +L G +PGD+G+DP GL+  P+     Q  EL+H RWAMLGAAG  IPE   K G    P   W+  G      +T   F            I E+VL+G AE
Sbjct:   63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVLIGWAE 165          
The following BLAST results are available for this feature:
BLAST of FC920476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB24_SOLLC7.088e-2244.44Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC7.088e-2244.70Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_SOLLC9.258e-2241.40Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_CUCSA3.518e-2142.75Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB23_HORVU7.837e-2139.49Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNSA8.665e-2038.61Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB48_MAIZE1.251e-1838.06Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_MALDO6.210e-1841.27Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB22_SOYBN1.059e-1739.10Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB12_SOLLC2.442e-1438.52Chlorophyll a-b binding protein 7, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32008H04EF RVDevelop1 Citrus clementina cDNA clone C32008H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920476 ID=FC920476; Name=FC920476; organism=Citrus clementina; type=EST; length=753bp
GACTCTCATCTTCACCATTTCATTTCTCTAACACAAAGAAGCAGCAGCAG
CAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCT
CCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCT
GTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGT
TGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCG
TCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGAC
CGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGA
GTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTC
TCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATT
CATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGC
CTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGA
CTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAAC
ATCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGG
TGGTGCTGAATATTATAGAATCACCACGGTTTGGATTGGAGGACAAGCTC
ACCCAGTGGTCATTTGACCACTGGGATTAGCAAGATCTGACCATTGCATG
CTA
back to top