FC920481

Overview
NameFC920481
Unique NameFC920481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: STRE_STRGR (dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 65/213 (30.52%), Postives = 97/213 (45.54%), Query Frame = 2
Query:   26 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY----FTGSKDNLRKWIGHPRFELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG 637
            +LVTG AGFIGS  V  L+       +VV       + G+ DNL    GHPR+   R D+ +     ++   DQ+ HLA  +       +    ++TNV GT  +L  A R G A  +  ST EVYG       +   W    P+   S Y   K   + L   +H  HG+++R+ R  N YGPR   +  +++  FI   + G  + +   G
Sbjct:    5 LLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDICDAPGRRVMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHGVASFVQVSTDEVYGS-----LEHGSWTEDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTRCSNNYGPRQFPE--KLIPRFITLLMDGHRVPLYGDG 210          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 63/222 (28.38%), Postives = 112/222 (50.45%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+ +++ ++  +D    GS D + +++G+PRF  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG  D     +D S    V PI   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLRDDRYDIYGLD---IGS-DAISRFLGNPRFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIIFPSTSEVYGMCDDKEFDEDHSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLMDGGAQ 533          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_AERS4 (Bifunctional polymyxin resistance protein arnA OS=Aeromonas salmonicida (strain A449) GN=arnA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 64/222 (28.83%), Postives = 109/222 (49.10%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLVHPQDESYWGNVNPI-GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+++ + E+  +D     S   L ++I HP F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG  D     +DES    V PI   R  Y   K++ + +++ Y ++ G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  319 RVLILGVNGFIGNHLTERLLKDGRYEIYGLDI----SASALGRFIDHPHFHFVEGDISIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYGMCDDHSFDEDESRL-IVGPIHKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLFRPFNWMGPRLDSLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQ 535          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_AERHH (Bifunctional polymyxin resistance protein arnA OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=arnA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 66/221 (29.86%), Postives = 109/221 (49.32%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDE-SYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+++   EV  +D    GS   + ++IGHP F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG    H  DE S    V PI   R  Y   K++ + +++ Y ++ G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  319 RVLILGVNGFIGNHLTERLLQDGGYEVYGLD---IGSSA-VDRFIGHPNFHFVEGDISIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYHKRIIFPSTSEVYGMCDDHSFDEDSSRLIVGPINKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLFRPFNWMGPRLDSLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQ 535          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_YERPY (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=arnA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 64/222 (28.83%), Postives = 112/222 (50.45%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+++++ EV  +D    GS D + +++G+P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG  D     +D S    V PI   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQ 533          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_YERPS (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis GN=arnA PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 64/222 (28.83%), Postives = 112/222 (50.45%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+++++ EV  +D    GS D + +++G+P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG  D     +D S    V PI   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQ 533          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_YERPP (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis (strain Pestoides F) GN=arnA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 64/222 (28.83%), Postives = 112/222 (50.45%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+++++ EV  +D    GS D + +++G+P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG  D     +D S    V PI   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQ 533          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_YERPN (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=arnA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 64/222 (28.83%), Postives = 112/222 (50.45%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+++++ EV  +D    GS D + +++G+P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG  D     +D S    V PI   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQ 533          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_YERPG (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=arnA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 64/222 (28.83%), Postives = 112/222 (50.45%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+++++ EV  +D    GS D + +++G+P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG  D     +D S    V PI   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQ 533          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_YERPE (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis GN=arnA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 64/222 (28.83%), Postives = 112/222 (50.45%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+++++ EV  +D    GS D + +++G+P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG  D     +D S    V PI   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQ 533          
The following BLAST results are available for this feature:
BLAST of FC920481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
STRE_STRGR2.024e-1730.52dTDP-glucose 4,6-dehydratase OS=Streptomyces grise... [more]
ARNA_SERP52.643e-1728.38Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERS47.690e-1728.83Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERHH1.004e-1629.86Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPY1.312e-1628.83Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPS1.312e-1628.83Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPP1.312e-1628.83Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPN1.312e-1628.83Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPG1.312e-1628.83Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPE1.312e-1628.83Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32008H11EF RVDevelop1 Citrus clementina cDNA clone C32008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920481 ID=FC920481; Name=FC920481; organism=Citrus clementina; type=EST; length=693bp
CAAATTTTTTCAGTCCAACATGAGGATTCTGGTTACTGGAGGAGCTGGAT
TTATCGGCTCTCACCTTGTGGACAAGTTGATGGAAAATGAAAAGAACGAG
GTGATTGTAGTTGATAACTACTTCACTGGCTCAAAGGATAACCTAAGGAA
ATGGATTGGTCACCCAAGATTTGAGCTTATTCGTCATGATGTGACTGAGC
CATTGTTGATCGAGGTTGATCAAATTTATCACCTTGCTTGTCCTGCCTCC
CCAATCTTCTACAAATACAACCCTGTAAAGACTATAAAGACAAATGTGAT
TGGTACATTGAACATGCTGGGGCTTGCCAAGCGAGTCGGAGCTAGGATTT
TGCTTACATCAACTTCAGAGGTTTACGGAGATCCTCTTGTGCATCCCCAG
GATGAGAGCTATTGGGGAAATGTGAACCCAATTGGAGTCAGGAGTTGCTA
TGATGAGGGAAAAAGAGTTGCAGAAACTTTGATGTTTGACTACCATCGGC
AGCATGGGATTGAGATAAGGATTGCTAGGATTTTCAACACCTATGGACCC
CGCATGAATATTGATGATGGTCGTGTTGTCAGCAATTTTATTGCTCAAGC
AATCCGTGGCGAACCCTTGACTGTTCAAGCTCCTGGAACACAACTCGTAG
TTTCTGTTATGTCTCAGACATGGTTGATGGCCTTATTCGGCTT
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