FC920481

Overview
NameFC920481
Unique NameFC920481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: GALE_HAEIN (UDP-glucose 4-epimerase OS=Haemophilus influenzae GN=galE PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 58/189 (30.69%), Postives = 88/189 (46.56%), Query Frame = 2 
Query:   20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHP--QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHR-QHGIEIRIARIFNTYG 547
            M ILVTGGAG+IGSH V +L+ N   EV+V+DN    S  +L   K I     +    D+ +  L+       E++ + H A   +       P +    NV GTL ++   K+ G    + +S++ VYGDP + P  +D    G  NP      Y   K + E ++ D  + +    + I R FN  G
Sbjct:    1 MAILVTGGAGYIGSHTVVELL-NVGKEVVVLDNLCNSSPKSLERVKQITGKEAKFYEGDILDRALLQKIFAENEINSVIHFAGLKAVGESVQKPTEYYMNNVAGTLVLIQEMKKAGVWNFVFSSSATVYGDPKIIPITEDCEVGGTTNP------YGTSKYMVEQILRDTAKAEPKFSMTILRYFNPVG 182
The following BLAST results are available for this feature:
BLAST of FC920481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GALE_HAEIN6.305e-1130.69UDP-glucose 4-epimerase OS=Haemophilus influenzae ... [more]

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Properties
Property NameValue
Genbank descriptionC32008H11EF RVDevelop1 Citrus clementina cDNA clone C32008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920481 ID=FC920481; Name=FC920481; organism=Citrus clementina; type=EST; length=693bp
CAAATTTTTTCAGTCCAACATGAGGATTCTGGTTACTGGAGGAGCTGGAT
TTATCGGCTCTCACCTTGTGGACAAGTTGATGGAAAATGAAAAGAACGAG
GTGATTGTAGTTGATAACTACTTCACTGGCTCAAAGGATAACCTAAGGAA
ATGGATTGGTCACCCAAGATTTGAGCTTATTCGTCATGATGTGACTGAGC
CATTGTTGATCGAGGTTGATCAAATTTATCACCTTGCTTGTCCTGCCTCC
CCAATCTTCTACAAATACAACCCTGTAAAGACTATAAAGACAAATGTGAT
TGGTACATTGAACATGCTGGGGCTTGCCAAGCGAGTCGGAGCTAGGATTT
TGCTTACATCAACTTCAGAGGTTTACGGAGATCCTCTTGTGCATCCCCAG
GATGAGAGCTATTGGGGAAATGTGAACCCAATTGGAGTCAGGAGTTGCTA
TGATGAGGGAAAAAGAGTTGCAGAAACTTTGATGTTTGACTACCATCGGC
AGCATGGGATTGAGATAAGGATTGCTAGGATTTTCAACACCTATGGACCC
CGCATGAATATTGATGATGGTCGTGTTGTCAGCAATTTTATTGCTCAAGC
AATCCGTGGCGAACCCTTGACTGTTCAAGCTCCTGGAACACAACTCGTAG
TTTCTGTTATGTCTCAGACATGGTTGATGGCCTTATTCGGCTT
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