FC920481

Overview
NameFC920481
Unique NameFC920481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: YFNG_BACSU (Putative sugar dehydratase/epimerase yfnG OS=Bacillus subtilis GN=yfnG PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 59/220 (26.82%), Postives = 107/220 (48.64%), Query Frame = 2
Query:    8 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT 640
            F  N  + VTG  G +GS+LV +L+E   N   +V ++   S  NL +     +  ++R  + +  +IE       +D ++HLA  A       NP+ T + N++GT N+L   ++  +  R+++ S+ + YGD    P DE+      P+  +  YD  K  A+ +   Y   +G+ + I R  N YG   +++  R++   I   + GE   +++ GT
Sbjct:    3 FWKNKNVFVTGCTGLLGSYLVKELIEQGANVTGLVRDHVPQS--NLYQGEHIKKMNIVRGSLEDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEACRKHPLIKRVIVASSDKAYGDQENLPYDENM-----PLQGKHPYDVSKSCADLISHTYFHTYGLPVCITRCGNLYGGG-DLNFNRIIPQTIQLVLNGEAPEIRSDGT 214          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_ERWT9 (Bifunctional polymyxin resistance protein arnA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=arnA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 64/221 (28.96%), Postives = 107/221 (48.42%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+ ++  EV  +D    GS D + ++IGH RF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE      V PI   R  Y   K++ + +++ Y  + G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLVDDNFEVFGLD---IGS-DAIGRFIGHERFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYKKRIIFPSTSEVYGMCTDASFDEDSSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGRQ 533          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFBB_NEIGO (dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 64/230 (27.83%), Postives = 110/230 (47.83%), Query Frame = 2
Query:   11 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646
            +    ILVTGGAGFIGS +V  +++N ++ V+ +D   + G+ ++L     +PR+   + D+ +   ++        D + HLA  +       +  + I+TN++GT ++L  A          KR   R    ST EVYGD  +H  D+ +     P    S Y   K  A+ L+  + R + +   ++   N YGPR   +  +++   I  A+ G+PL V   G Q+
Sbjct:    4 EGKKNILVTGGAGFIGSAVVRHIIQNTRDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQMPSEKREAFRFHHISTDEVYGD--LHGTDDLF-TETTPYAPSSPYSASKAAADHLVRAWQRTYRLPSIVSNCSNNYGPRQFPE--KLIPLMILNALSGKPLPVYGDGAQI 228          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_SHESH (Bifunctional polymyxin resistance protein arnA OS=Shewanella sediminis (strain HAW-EB3) GN=arnA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 56/225 (24.89%), Postives = 106/225 (47.11%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPI------GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            ++L+ G  GFIG+HL  +L+++ K E+  +D     S   + + + HP F  +  D+T      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +  + +P+        R  Y   K++ + +++ Y ++  ++  + R FN  GPR++      +   R ++  I   + G P+ +   G Q
Sbjct:  319 KVLIMGANGFIGNHLTKRLLDDGKYEIYAMDM----SSSQIEQHLSHPDFHFVEGDITIHNEWIEYHIKKCDIVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRACVKYDKRIIFPSTSEVYG----MCTDEEFDEDTSPLITGPINRQRWIYSTSKQLLDRVIWAYGKKDNLKFTLFRPFNWMGPRLDSLNSARVGSSRAITQLILNLVEGTPIKLIDGGEQ 535          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_SALTI (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhi GN=arnA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 61/222 (27.48%), Postives = 108/222 (48.65%), Query Frame = 2
Query:   20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            +R+L+ G  GFIG+HL ++L++ E  EV  +D    GS + + +++ HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG       DE      V P+   R  Y   K++ + +++ Y  + G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  316 IRVLILGVNGFIGNHLTERLLDEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQ 533          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_SALPK (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A (strain AKU_12601) GN=arnA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 61/222 (27.48%), Postives = 108/222 (48.65%), Query Frame = 2
Query:   20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            +R+L+ G  GFIG+HL ++L++ E  EV  +D    GS + + +++ HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG       DE      V P+   R  Y   K++ + +++ Y  + G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  316 IRVLILGVNGFIGNHLTERLLDEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQ 533          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_SALPA (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A GN=arnA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 61/222 (27.48%), Postives = 108/222 (48.65%), Query Frame = 2
Query:   20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            +R+L+ G  GFIG+HL ++L++ E  EV  +D    GS + + +++ HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG       DE      V P+   R  Y   K++ + +++ Y  + G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  316 IRVLILGVNGFIGNHLTERLLDEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQ 533          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_PHOLL (Bifunctional polymyxin resistance protein arnA OS=Photorhabdus luminescens subsp. laumondii GN=arnA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 62/222 (27.93%), Postives = 108/222 (48.65%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+ +   ++  +D    GS   + ++I +PRF  I  D+       E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG  D     +D+S    V PI   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLRDGNYDIYGMD---IGSSA-IERFISNPRFHFIEGDINIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYGMCDDKEFDEDDSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLKFTLFRPFNWMGPRLDNLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQ 533          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL5 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 61/221 (27.60%), Postives = 107/221 (48.42%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  317 RVLILGVNGFIGNHLTERLLCEDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ 533          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 70/219 (31.96%), Postives = 101/219 (46.12%), Query Frame = 2
Query:   20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-----FTGSKDNLRKWIGHPRFELIRHDV----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            M+ILVTG AGFIGSHL ++L++++K+ VI +D++     F+    NL+  +   RF  I+ ++       LL  VD I+HLA          N       + I  L  L  A R  +    +  STS VYG+      + +    ++P GV       K   E L   Y +  GI I I R F  YGPR   D        I Q ++ +PLT+   G Q
Sbjct:    1 MKILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIKENLLTADLASLLEGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACREHSIQTFVFASTSSVYGEKQGKVSENTSLSPLSPYGVT------KLTGEKLCHVYKQSFGIPIVILRFFTVYGPRQRPD--MAFHRLIKQHLQQKPLTIFGDGQQ 211          
The following BLAST results are available for this feature:
BLAST of FC920481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
YFNG_BACSU4.985e-1626.82Putative sugar dehydratase/epimerase yfnG OS=Bacil... [more]
ARNA_ERWT96.510e-1628.96Bifunctional polymyxin resistance protein arnA OS=... [more]
RFBB_NEIGO8.502e-1627.83dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrho... [more]
ARNA_SHESH8.502e-1624.89Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALTI8.502e-1627.48Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPK8.502e-1627.48Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPA8.502e-1627.48Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PHOLL8.502e-1627.93Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOL58.502e-1627.60Bifunctional polymyxin resistance protein arnA OS=... [more]
YTCB_BACSU1.110e-1531.96Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionC32008H11EF RVDevelop1 Citrus clementina cDNA clone C32008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920481 ID=FC920481; Name=FC920481; organism=Citrus clementina; type=EST; length=693bp
CAAATTTTTTCAGTCCAACATGAGGATTCTGGTTACTGGAGGAGCTGGAT
TTATCGGCTCTCACCTTGTGGACAAGTTGATGGAAAATGAAAAGAACGAG
GTGATTGTAGTTGATAACTACTTCACTGGCTCAAAGGATAACCTAAGGAA
ATGGATTGGTCACCCAAGATTTGAGCTTATTCGTCATGATGTGACTGAGC
CATTGTTGATCGAGGTTGATCAAATTTATCACCTTGCTTGTCCTGCCTCC
CCAATCTTCTACAAATACAACCCTGTAAAGACTATAAAGACAAATGTGAT
TGGTACATTGAACATGCTGGGGCTTGCCAAGCGAGTCGGAGCTAGGATTT
TGCTTACATCAACTTCAGAGGTTTACGGAGATCCTCTTGTGCATCCCCAG
GATGAGAGCTATTGGGGAAATGTGAACCCAATTGGAGTCAGGAGTTGCTA
TGATGAGGGAAAAAGAGTTGCAGAAACTTTGATGTTTGACTACCATCGGC
AGCATGGGATTGAGATAAGGATTGCTAGGATTTTCAACACCTATGGACCC
CGCATGAATATTGATGATGGTCGTGTTGTCAGCAATTTTATTGCTCAAGC
AATCCGTGGCGAACCCTTGACTGTTCAAGCTCCTGGAACACAACTCGTAG
TTTCTGTTATGTCTCAGACATGGTTGATGGCCTTATTCGGCTT
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