FC920481

Overview
NameFC920481
Unique NameFC920481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAB (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=arnA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 65/227 (28.63%), Postives = 108/227 (47.58%), Query Frame = 2
Query:   11 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            Q   R+L+ G  GFIG+HL ++L+ + + EV  +D    GS D + +    P F  +  D+       E  + + D +  L   A+PI Y  NP++  + +    L ++    + G R++  STSEVYG   DP    +D S    V PI   R  Y   K++ + +++ Y +Q G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  315 QRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDP-DFDEDRSNL-VVGPINKQRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQ 534          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 61/225 (27.11%), Postives = 109/225 (48.44%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-----VNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643
            R+L+ G  GFIG+HL ++L+++++ ++  +D    GS D + +    P F  I  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG      QD S+  +     V PI   R  Y   K++ + +++ Y  Q G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q
Sbjct:  320 RVLILGVNGFIGNHLSERLLQDDRYDIYGMD---IGS-DAIERLRTKPNFHFIEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG----MCQDASFNEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAY-GQKGLQFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQ 535          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFBB_SALTY (dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium GN=rfbB PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 62/233 (26.61%), Postives = 105/233 (45.06%), Query Frame = 2
Query:   20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLVHPQDES------YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646
            M+IL+TGGAGFIGS +V  +++N ++ V+ +D   + G+ ++L       R+     D+ +   I       + D + HLA  +        P   I+TN++GT  +L +A          K+   R    ST EVYGD L HP +         +         S Y   K  ++ L+  + R +G+   +    N YGP    +  +++   I  A+ G+PL +   G Q+
Sbjct:    1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQI 230          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFFG_ECOLI (dTDP-glucose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=rffG PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 64/226 (28.32%), Postives = 102/226 (45.13%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646
            +IL+TGGAGFIGS LV  ++    + V+VVD   + G+  +L       RF   + D+ +   +       + D + HLA  +        P   I+TN++GT  +L  A          K+   R    ST EVYGD  +H  D+ ++    P    S Y   K  ++ L+  + R +G+   I    N YGP    +  +++   I  A+ G+ L V   G Q+
Sbjct:    3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGD--LHSTDD-FFTETTPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKSLPVYGNGQQI 223          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMB (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B GN=rfbB1 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 61/226 (26.99%), Postives = 105/226 (46.46%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK----------RVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646
            +ILVTGGAGFIGS +V  ++ N ++ V+ VD   + G+ ++L +   +PR+   + D+ +   ++        D + HLA  +       +  + I+TN++GT N+L  A+              R    ST EVYGD       +  +    P    S Y   K  ++ L+  + R +G+   +    N YGP    +  +++   I  A+ G+PL V   G Q+
Sbjct:    3 KILVTGGAGFIGSAVVRHIIRNTRDAVVNVDKLTYAGNLESLTEVADNPRYAFEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQMPSEQHEAFRFHHISTDEVYGD---LGGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQI 223          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: GALE_STRTR (UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 58/191 (30.37%), Postives = 93/191 (48.69%), Query Frame = 2
Query:   20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI--------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSEVYGDPLVHPQDESYWGN-VNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 562
            M ILV GGAG+IGSH+VD+L+E  + +V+VVD+  TG +  +     HP     + D+++   +        +VD + H A  +        P+K    N  G + +L +    G + I+ +ST+  YG P   P  E+   N +NP      Y E K + ET+M    + +GI+    R FN  G  + +
Sbjct:    1 MAILVLGGAGYIGSHMVDRLVEKGQEKVVVVDSLVTGHRAAV-----HPDAIFYQGDLSDQDFMRKVFKENPDVDAVIHFAAYSLVGESMEKPLKYFDNNTAGMVKLLEVMNECGVKYIVFSSTAATYGIPEEIPILETTPQNPINP------YGESKLMMETIMKWSDQAYGIKYVPLRYFNVAGANLMV 180          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFBB_SHIFL (dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 65/234 (27.78%), Postives = 106/234 (45.30%), Query Frame = 2
Query:   20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPI-------GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646
            M+ILVTGGAGFIGS +V  ++ N ++ V+ VD   + G+ ++L       R+     D+ + + +       + D + HLA  +        P   I+TN++GT  +L  A          K+   R    ST EVYGD L HP DE+      P+          S Y   K  ++ L+  + R +G+   +    N YGP    +  +++   I  A+ G+ L +   G Q+
Sbjct:    1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYAFEHADICDAVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALNDEKKKSFRFHHISTDEVYGD-LPHP-DEANNNEALPLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKALPIYGKGDQI 230          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMA (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A GN=rfbB1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 61/226 (26.99%), Postives = 104/226 (46.02%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646
            +ILVTGGAGFIGS +V  ++ N ++ V+ +D   + G+ ++L     +PR+   + D+ +   ++        D + HLA  +       +  + I+TN++GT N+L  A          K    R    ST EVYGD       +  +    P    S Y   K  ++ L+  + R +G+   +    N YGP    +  +++   I  A+ G+PL V   G Q+
Sbjct:    3 KILVTGGAGFIGSAVVRHIIRNTQDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMPSEKHEAFRFHHISTDEVYGD---LSGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQI 223          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: TGDS_DICDI (dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 59/222 (26.58%), Postives = 104/222 (46.85%), Query Frame = 2
Query:   23 RILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHPQDESYWGNVNP-------IGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG 637
            +IL+TGGAGFIGSHL   L +  KN ++IV+D   +  + +NL   +    F+  + ++ +  L+E       +D + HLA            +K  + N++GT  +L   K     + +  ST EVYG  L+   D++   ++N        +   + Y   K  AE L+  Y++   + + I R  N YGP+   +  +++  FI   +  +  T+   G
Sbjct:   11 KILITGGAGFIGSHLAIYLTKKFKNSKIIVLDKLDYCSNINNLGCVLKELNFKFYKGNILDSELLENIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLLETCKNYKLKKFIYVSTDEVYGSGLIEDNDDNN-NSINQSSNEKSILNPTNPYSASKAGAEHLVQSYYKSFKLPVIITRANNIYGPKQYPE--KIIPKFINLLLNNKKCTIHGTG 229          
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFBB_ECOLI (dTDP-glucose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=rfbB PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 63/233 (27.04%), Postives = 105/233 (45.06%), Query Frame = 2
Query:   20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEV------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLVHPQDES------YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646
            M+ILVTGGAGFIGS +V  ++ N ++ V+ VD   + G++++L       R+     D+ + P +  +      D + HLA  +        P   I+TN++GT  +L  A          K+   R    ST EVYGD L HP + +       +         S Y   K  ++ L+  + R +G+   +    N YGP    +  +++   I  A+ G+ L +   G Q+
Sbjct:    1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNRESLADVSDSERYVFEHADICDAPAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDSDKKNSFRFHHISTDEVYGD-LPHPDEVNNTEELPLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKALPIYGKGDQI 230          
The following BLAST results are available for this feature:
BLAST of FC920481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ARNA_PSEAB1.357e-1328.63Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSE141.773e-1327.11Bifunctional polymyxin resistance protein arnA OS=... [more]
RFBB_SALTY2.315e-1326.61dTDP-glucose 4,6-dehydratase OS=Salmonella typhimu... [more]
RFFG_ECOLI5.158e-1328.32dTDP-glucose 4,6-dehydratase OS=Escherichia coli (... [more]
RFBB_NEIMB5.158e-1326.99dTDP-glucose 4,6-dehydratase OS=Neisseria meningit... [more]
GALE_STRTR5.158e-1330.37UDP-glucose 4-epimerase OS=Streptococcus thermophi... [more]
RFBB_SHIFL6.737e-1327.78dTDP-glucose 4,6-dehydratase OS=Shigella flexneri ... [more]
RFBB_NEIMA6.737e-1326.99dTDP-glucose 4,6-dehydratase OS=Neisseria meningit... [more]
TGDS_DICDI8.799e-1326.58dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium di... [more]
RFBB_ECOLI8.799e-1327.04dTDP-glucose 4,6-dehydratase OS=Escherichia coli (... [more]

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Properties
Property NameValue
Genbank descriptionC32008H11EF RVDevelop1 Citrus clementina cDNA clone C32008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920481 ID=FC920481; Name=FC920481; organism=Citrus clementina; type=EST; length=693bp
CAAATTTTTTCAGTCCAACATGAGGATTCTGGTTACTGGAGGAGCTGGAT
TTATCGGCTCTCACCTTGTGGACAAGTTGATGGAAAATGAAAAGAACGAG
GTGATTGTAGTTGATAACTACTTCACTGGCTCAAAGGATAACCTAAGGAA
ATGGATTGGTCACCCAAGATTTGAGCTTATTCGTCATGATGTGACTGAGC
CATTGTTGATCGAGGTTGATCAAATTTATCACCTTGCTTGTCCTGCCTCC
CCAATCTTCTACAAATACAACCCTGTAAAGACTATAAAGACAAATGTGAT
TGGTACATTGAACATGCTGGGGCTTGCCAAGCGAGTCGGAGCTAGGATTT
TGCTTACATCAACTTCAGAGGTTTACGGAGATCCTCTTGTGCATCCCCAG
GATGAGAGCTATTGGGGAAATGTGAACCCAATTGGAGTCAGGAGTTGCTA
TGATGAGGGAAAAAGAGTTGCAGAAACTTTGATGTTTGACTACCATCGGC
AGCATGGGATTGAGATAAGGATTGCTAGGATTTTCAACACCTATGGACCC
CGCATGAATATTGATGATGGTCGTGTTGTCAGCAATTTTATTGCTCAAGC
AATCCGTGGCGAACCCTTGACTGTTCAAGCTCCTGGAACACAACTCGTAG
TTTCTGTTATGTCTCAGACATGGTTGATGGCCTTATTCGGCTT
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