FC920488

Overview
NameFC920488
Unique NameFC920488
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920488_ssr21 microsatellite FC920488_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 7.126e-79
Identity = 135/197 (68.53%), Postives = 160/197 (81.22%), Query Frame = 3
Query:  105 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRN 695
            ++LSL      K    ++ G W +A ATFYGG+DASGTMGGACGYGNLYSQGYG NTAALSTALFN G SCGACF++KC  DP+WC  G   I +T TNFCPPNFAQ ++ GGWCNPP+ HFDLA P+FL++AQY+AG+VPV YRRV CR++GGIRFTING  YFNLVL+TNVAGAGD++ VS+KG NT+W SMSRN
Sbjct:    9 ISLSLMMMIMWKSVDGYSSG-WVNARATFYGGADASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGT--ITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRN 202          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.073e-78
Identity = 137/197 (69.54%), Postives = 155/197 (78.68%), Query Frame = 3
Query:  105 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRN 695
            V   LF    A   G    G WQSAHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFN+G +CG+C+EL+C      C PG+  I +TATNFCPPN+  PSD+GGWCNPPRPHFD+A P FL +AQYRAGIVPVS+RRVPC K+GG+RFT+NG  YFNLVLVTNVAGAGD+  VS+KG+ T W  MSRN
Sbjct:    6 VLFLLFLARQASAAGY---GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGS--ITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRN 197          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.073e-78
Identity = 137/197 (69.54%), Postives = 155/197 (78.68%), Query Frame = 3
Query:  105 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRN 695
            V   LF    A   G    G WQSAHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFN+G +CG+C+EL+C      C PG+  I +TATNFCPPN+  PSD+GGWCNPPRPHFD+A P FL +AQYRAGIVPVS+RRVPC K+GG+RFT+NG  YFNLVLVTNVAGAGD+  VS+KG+ T W  MSRN
Sbjct:    6 VLFLLFLARQASAAGY---GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGS--ITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRN 197          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.138e-76
Identity = 131/179 (73.18%), Postives = 147/179 (82.12%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQ-WLSMSRN 695
            G WQ  HATFYGG DASGTMGGACGYGNLY QGYG NTAALSTALFNNGL+CGAC+E+KC  DP+WC      I +TATNFCPPN    +DNGGWCNPP  HFDLA P FL++AQYRAGIVPVS+RRVPC K+GGIRFTING  YFNLVL++NV GAGD+  VS+KG+ TQ W +MSRN
Sbjct:   28 GGWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCL--GSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRN 204          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.486e-76
Identity = 132/179 (73.74%), Postives = 152/179 (84.92%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANT-QWLSMSRN 695
            G W+  HATFYGG+DASGTMGGACGYGNL+SQGYG+ TAALSTALFN+G  CGACFEL+C  DP+WC PG+  I+++ATNFCPPNFA  +DNGGWCNPP  HFDLA P FL++AQYRAGIVPV++RRVPC K GGIRFTING  YF+LVL+TNV GAGDI  VS+KG+ T QW SMSRN
Sbjct:   30 GGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGS--IIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRN 206          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.046e-74
Identity = 130/183 (71.04%), Postives = 151/183 (82.51%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC---GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG-ANTQWLSMSRN 695
            GG W SAHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFNNGLSCGACFE++C   GG    C PG+  +++TATNFCPPN A PSD+GGWCNPPR HFD++ P+F ++A ++AGIVPVSYRRV C+K+GGIRFTING  YFNLVLVTNV GAGD+  V+VK   +  W ++SRN
Sbjct:   61 GGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGS--VVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRN 241          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.474e-73
Identity = 125/185 (67.57%), Postives = 148/185 (80.00%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQW-CNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANT------QWLSMSRN 695
            G WQ  HATFYGG DASGTMGGACGYGNLYSQGYG +TAALSTALFN GLSCG+C+EL+C GD +  C PG   + +TATNFCPPN+A PSD GGWCNPPR HFDLA P FL++A++ AGIVPVS+RRV C ++GG+RFT+NG  YFNLVLVTNV GAGD+  ++VKG+ +      +W  MSRN
Sbjct:   26 GQWQPGHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRN 210          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 5.469e-71
Identity = 135/210 (64.29%), Postives = 151/210 (71.90%), Query Frame = 3
Query:   72 MALFRMLCFFSVALSLFATANAKIPGVFAGGP--WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRN 695
            M L R+L   +VA        A    V AGG   W S  ATFYGGSDASGTMGGACGYGNLYS GYG +TAALSTALFNNG SCGACFE++CGG    C  G  A+  TATN CPPN+A   D GGWCNPPRPHFD+A P F ++AQ RAG+VPV YRRV C K+GGIRFTI G  YFNLVLVTNV GAGD+  VSVKG+ + W +MS N
Sbjct:    1 MELLRLLAVAAVA--------AMAAEVAAGGDSGWSSGSATFYGGSDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGS-CLAGTVAV--TATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHN 199          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.142e-71
Identity = 126/189 (66.67%), Postives = 150/189 (79.37%), Query Frame = 3
Query:  138 KIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGA-NTQWLSMSRN 695
            KI  V AG  W  AHATFYGGSDASGTMGGACGYGNLY+ GY  NTAALSTALFN+G SCG C+++ C     PQWC  G  +I ITATNFCPPNFAQ SDNGGWCNPPRPHFD+A P FL +A+Y+AGIVP+ Y++V CR+ GG+RFTING  YF LVL++NVAG G+I +V +KG+ + +W +MSRN
Sbjct:   20 KISSVSAG--WLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGK-SITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKGSKSNKWETMSRN 205          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.078e-70
Identity = 129/201 (64.18%), Postives = 148/201 (73.63%), Query Frame = 3
Query:  102 SVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANT-QWLSMSRN 695
            S A +  AT     P V A   WQ AHATFYGG+DASGTMGGACGYGNLYSQGYG   AALSTALFN+G SCG C+++ C     PQWC PG   + ITATNFCPPN+  PSDNGGWCNPPRPHFD+A P + K+  Y AGI+PV Y+RVPC K+GG+RFTING  YF LVLVTNVA AG I  + V G+NT  W+ M+RN
Sbjct:   18 STAAANTATTTPTNP-VAAPTQWQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPG-VTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARN 216          
The following BLAST results are available for this feature:
BLAST of FC920488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EXP14_ARATH7.126e-7968.53Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA4_ORYSJ2.073e-7869.54Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI2.073e-7869.54Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA8_ARATH1.138e-7673.18Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA2_ARATH1.486e-7673.74Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA5_ORYSJ4.046e-7471.04Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ORYSJ4.474e-7367.57Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP11_ORYSJ5.469e-7164.29Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH7.142e-7166.67Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP23_ORYSJ2.078e-7064.18Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC32009A09EF RVDevelop1 Citrus clementina cDNA clone C32009A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920488 ID=FC920488; Name=FC920488; organism=Citrus clementina; type=EST; length=695bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAA
CTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCA
ACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTC
GCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCTG
CAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTCA
ACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGTG
AGCGTGAAAGGGGCCAACACCCAATGGCTGAGCATGAGCCGCAAC
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