FC920488

Overview
NameFC920488
Unique NameFC920488
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920488_ssr21 microsatellite FC920488_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 2.298e-69
Identity = 123/210 (58.57%), Postives = 153/210 (72.86%), Query Frame = 3
Query:   78 LFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGG--DPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGA--NTQWLSMSRN 695
            +F ++ F S AL   A+   +    FA   W    ATFYGGSDASGTMGGACGYGNLY+QGYG  TAALSTALF++G SCG C+ L C    DP+WC  G  ++ +TATNFCPPN+A PSD+GGWCNPPRPHFD+A P + ++  YR GIVPV++RRVPCR+RGG+RFT+ G  YF LVLVTNVA AG +  + V+G+     W++MSRN
Sbjct:    7 VFAVVAFVSYALLAAASTTVE---AFAASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAG-ASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRN 212          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 3.001e-69
Identity = 127/208 (61.06%), Postives = 150/208 (72.12%), Query Frame = 3
Query:   90 LCFFSVAL---SLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGAN-TQWLSMSRN 695
            L FF++A    +   TA+   P V     WQ AHATFYGG+DASGTMGG CGYG+LYSQGYG   AALSTALFN+G SCG C+++ C     PQWC PG   + ITATNFCPPN+  PSDNGGWCNPPRPHFD+A P + K+  Y AGI+PV Y+RVPC K+GG+RFTING  YFNLVLVTNVA  G I  + + G+N T W+ M RN
Sbjct:   10 LVFFAIAAVGCTQLTTADDAAPPV-----WQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPG-VTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRN 211          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.919e-69
Identity = 122/178 (68.54%), Postives = 142/178 (79.78%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRN 695
            GPW +AHATFYGG DASGTMGGACGYGNLYSQGYG+ TAALSTALF+ GLSCGACFEL C  DPQWC  G  +I++TATNFCPP        GG C+PP  HFDL+ P++ K+A Y++GI+PV YRRV C++ GGIRFTING  YFNLVLVTNV GAGD+  VS+KG+ T+W  MSRN
Sbjct:   36 GPWINAHATFYGGGDASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGR-SIVVTATNFCPP--------GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRN 204          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 8.731e-69
Identity = 122/179 (68.16%), Postives = 139/179 (77.65%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGAN-TQWLSMSRN 695
            W  AHATFYGG+DASGTMGGACGYG+LYSQGYG   AALSTALFN+G SCG C+++ C     PQWC PG   + ITATNFCPPN+  PSDNGGWCNPPRPHFD+A P + K+  YRAGI+PV Y+RVPC K+GG+RFTING  YFNLVLVTNVA  G I  + V G+N T WL M RN
Sbjct:   52 WLKAHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPG-VTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRN 229          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.945e-68
Identity = 124/209 (59.33%), Postives = 148/209 (70.81%), Query Frame = 3
Query:   72 MALFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGG-DPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRN 695
            MA  RML   +   +L  TA+A          W  A ATFYGGSDASGTMGGACGYG+LY  GYG  TAALSTALFN G SCGACF + C     QWC PG  +I +TATNFCPPN+A   D GGWCNPPR HFD++ P +  +A YRAGIVPV+YRRVPC++ GGIRF +NG  YF LVLVTNV G+G + ++ +KG+ T W++MSRN
Sbjct:    1 MAAARMLVLLASLCALLLTASA--------AKWTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGT-SITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRN 200          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 7.391e-68
Identity = 118/179 (65.92%), Postives = 138/179 (77.09%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGAN-TQWLSMSRN 695
            W  AHATFYGG+DASGTMGGACGY +LYSQGYG   AALSTALFN+G SCG C+++ C     PQWC PG   + +TATNFCPPN+  PSDNGGWCNPPRPHFD+A P + K+  YRAGI+PV Y+RVPC K+GG+RFTING  YFNLVLVTNVA  G I  + + G+N T W+ M RN
Sbjct:   50 WLKAHATFYGGADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPG-VTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRN 227          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 7.391e-68
Identity = 123/207 (59.42%), Postives = 148/207 (71.50%), Query Frame = 3
Query:   84 RMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGG--DPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANT-QWLSMSRN 695
            RML     A+   A   A   G      W  AHATFYGG+DASGTMGGACGYGNLY+QGYG  TAALSTALFN+GL+CG C++L C    D  WC PG  ++ ITATNFCPPN+  PSD+GGWCNPPRPHFD+A P + K+  YR GI+PV Y+RVPC K+GG+RFTING  YF LVL+TNV  AG I  + VKG+ +  W++M+ N
Sbjct:    6 RMLAAVVCAIMPAAAMAAGGVGALEPSGWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPG-VSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHN 211          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.791e-67
Identity = 123/212 (58.02%), Postives = 155/212 (73.11%), Query Frame = 3
Query:   87 MLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGG----DPQWCNP--GNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK---GANTQWLSMSRN 695
            +L   S++ SL +++ A      A G W  AHATFYGG+DASGTMGGACGYGN Y QGYG +TAALS  +F +GLSCGACFEL+CGG    D + C P     +I++TAT+ CP N A P D GGWCNPP  HFDL+ P FL++A++++GIVPVSYRRV CR++GG+RFTING  YFNLVLV+NV GAGD+  V+VK   G   +W +M+RN
Sbjct:    9 LLVLLSLSSSLSSSSAA------AAGRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARN 214          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 3.105e-66
Identity = 117/210 (55.71%), Postives = 149/210 (70.95%), Query Frame = 3
Query:   72 MALFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRN 695
            M + R     + AL + + + A      A G W S  ATFYGG DASGTMGGACGYGNLY+QGYGV  AALSTALFN G SCG C+ + C     P+WC  G  A+ ITATN CPPN+A  +D+GGWCNPPRPHFD++ P +  +  YRAGIVPV Y++V C ++GG+RFT++GF YF LVL+TNVAG+G +  +SVKG+ T W+ ++RN
Sbjct:    1 MMVIRFFAVLAAALCITSASAA------AAGGWVSGTATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGT-AVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARN 203          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 5.297e-66
Identity = 116/183 (63.39%), Postives = 137/183 (74.86%), Query Frame = 3
Query:  153 FAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRN 695
            F    W  A ATFYGGSDASGTMGGACGYG+LYS GYG NTAALST LFN+G SCG C+ + C    D ++C  G  ++ ITATN CPPN+A P+D GGWCNPPR HFD+A P +LK+  Y  GIVPV Y+RVPC K+GG+RFTING  YF LVLV+NV G G I  VS+KG+ T W++MSRN
Sbjct:   29 FTASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGT-SVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRN 210          
The following BLAST results are available for this feature:
BLAST of FC920488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EXP29_ORYSJ2.298e-6958.57Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ3.001e-6961.06Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA5_ARATH3.919e-6968.54Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP22_ORYSJ8.731e-6968.16Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA8_ORYSJ1.945e-6859.33Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP24_ORYSJ7.391e-6865.92Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ7.391e-6859.42Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ORYSJ4.791e-6758.02Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ3.105e-6655.71Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ5.297e-6663.39Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionC32009A09EF RVDevelop1 Citrus clementina cDNA clone C32009A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920488 ID=FC920488; Name=FC920488; organism=Citrus clementina; type=EST; length=695bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAA
CTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCA
ACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTC
GCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCTG
CAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTCA
ACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGTG
AGCGTGAAAGGGGCCAACACCCAATGGCTGAGCATGAGCCGCAAC
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