FC920488

Overview
NameFC920488
Unique NameFC920488
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920488_ssr21 microsatellite FC920488_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.716e-53
Identity = 100/182 (54.95%), Postives = 123/182 (67.58%), Query Frame = 3
Query:  156 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRN 695
            A   W    ATFYGG+D SGTMGGACGYGNLY Q YG+N AALST LFN+G SCG C+ + C  G  P WC  G  AI +T TN+           GGWCN  RP+FD++ P +  +  Y AGIVP+ Y++V C + GG+RF INGF YF LVLVTN+AG+G IV +SVKG+ T W+ M+RN
Sbjct:   19 ARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGK-AITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRN 188          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.267e-51
Identity = 98/180 (54.44%), Postives = 119/180 (66.11%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGT-MGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK--GANTQWLSMSRN 695
            W    ATFYG     G   GGACGY  N     Y   TAALST LF +G  CG C+EL+C   P WCNPG+P+++IT TN CPPN+  P+D+GGWCNPPR HFD+A P FLKLAQ  AGIVPV YRRVPC++ GG+RF + G  Y+ L+ V NV GAGD+  +SVK  G    W+  + N
Sbjct:   52 WHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHN 230          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 4.813e-51
Identity = 92/176 (52.27%), Postives = 118/176 (67.05%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRN 695
            W+ A AT+Y  ++    +GGACGYG+L   GYG+ T  LS  LF  G  CGACFEL+C  D +WC PG  +I++TATNFC PN+    D GG CNPP  HF L +  F K+A ++AG +PV YRR+ CRK G +RFT++G   F  VL+TNVAG+GDI  V +KG+ T WL M RN
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGT-SIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRN 214          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.185e-49
Identity = 91/183 (49.73%), Postives = 124/183 (67.76%), Query Frame = 3
Query:  147 GVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRN 695
            G  A   W+SA A++Y  +D    +GGACG+G+L   GYG+ T  LSTALF  G +CG C+E+KC  D ++C PG  +I++TATNFC PNF  P+D GG CNPP  HF L +  F K+A ++AG++P+ YRRV C + GG+RF + G  +F  VL++NV GAGD+  V +KG  + WLSM RN
Sbjct:   26 GSSALSEWRSAKASYYA-ADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGT-SIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRN 206          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.981e-48
Identity = 90/180 (50.00%), Postives = 125/180 (69.44%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQY-RAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQ-WLSMSRN 695
            W  AHAT+YG +D+  ++GGACGY N Y  G+G +TAALS  LF +G SCG C++++C    DP+WC  G  A+ +TATNFCP N     +N GWCN PR HFD++ P F ++A+    GIVPV YRRV C++RGG+RFT+ G   FN+V+++NV G G +  V+V+G+  + WL M+RN
Sbjct:   27 WIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRG-AAVTVTATNFCPTN-----NNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRN 200          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 3.228e-47
Identity = 93/176 (52.84%), Postives = 116/176 (65.91%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGT-MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSR 692
            W  A A +YG     GT + GACGYG+L   GYG+ TAALSTALFN+G SCGAC+E+ C  +PQ C  G+  I ITAT+ CPP  A       WC  P  HFDL++PMF+K+AQ +A +VPV YRRVPC K GG++F + G      +L  NV GAGDI+ VS KG+ T W+ MSR
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGS--IKITATDLCPPGSA-------WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSR 211          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.314e-45
Identity = 88/204 (43.14%), Postives = 124/204 (60.78%), Query Frame = 3
Query:   90 LCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRN 695
            LC F +   LF           A   W+ A AT     D S ++  GGACGYG+L    +   +A LS  LFN G SCGAC E++C    +WC  G+P++++TAT+FCPPN    SD GGWCN P+ H +L+   F  +A+ RA ++P+ YRRV C +RGG+RF+++G  +F  VL++NV   G++V V VKG  T W+ M+RN
Sbjct:   10 LCLFFILCRLFQAT--------AEDDWKIATATLSRDRDGSSSVATGGACGYGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARN 205          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.404e-42
Identity = 78/158 (49.37%), Postives = 105/158 (66.46%), Query Frame = 3
Query:  222 GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRN 695
            GGACGYG+L    YG  TA +S ALF  G +CG C+E++C     WC  G+P +++TAT+FC PN     D GGWCN P+ HF+++   FL++A+ +A IVPV +RRV C + GG+RFTI G   F  VL+TNVA  G++  V VKG+ T W+ M RN
Sbjct:   52 GGACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRN 209          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.314e-40
Identity = 94/193 (48.70%), Postives = 122/193 (63.21%), Query Frame = 3
Query:  135 AKIPGVFAG----GPWQSAHATFYGGSDASGTM-GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGA-NTQWLSMSRN 695
            AK+P V  G    GPW   HATFYGG DASGT  GGACGY +  + GYG  TAA+S ALF+NG  CGAC+ELK  GD          +++TATN  PP       NG        HFDL MP FL +A+ + G+VPVSYR+V C ++GGI++TI G   +N+V+V NV GAGD+V+++VKG    +W  + R+
Sbjct:   67 AKMPHVNHGRYKCGPWVDGHATFYGGRDASGTTEGGACGYKD--ADGYGAMTAAVSPALFDNGAGCGACYELK--GD------SGKTVVVTATNQAPPPV-----NG----MKGEHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRS 240          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 66/219 (30.14%), Postives = 107/219 (48.86%), Query Frame = 3
Query:   87 MLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG---GIRFTINGFRYFNLVLVTNVAGAGDIVRVSV-----KGANTQWLSMSRN 695
            ++ F ++A  +  ++ A +        W    AT+YG ++ SGT GGACGY G++    +    AA S +++ +G  CG+C+++KC G+P  C+ G P + +  T+ CP         GG C     HFDL+   F  +A+         AG +PV Y RVPC+ +G     R      +Y+  VLV +  G GD+  V +      G    W +M ++
Sbjct:   11 IVAFVALACCVLRSSVASVDHHRKLSGWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CS-GKP-VTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQS 217          
The following BLAST results are available for this feature:
BLAST of FC920488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EXP20_ORYSJ6.716e-5354.95Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ1.267e-5154.44Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH4.813e-5152.27Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP10_ORYSJ1.185e-4949.73Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH4.981e-4850.00Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP21_ARATH3.228e-4752.84Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ARATH2.314e-4543.14Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP16_ORYSJ1.404e-4249.37Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ1.314e-4048.70Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ1.670e-1930.14Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionC32009A09EF RVDevelop1 Citrus clementina cDNA clone C32009A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920488 ID=FC920488; Name=FC920488; organism=Citrus clementina; type=EST; length=695bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAA
CTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCA
ACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTC
GCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCTG
CAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTCA
ACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGTG
AGCGTGAAAGGGGCCAACACCCAATGGCTGAGCATGAGCCGCAAC
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