FC920488

Overview
NameFC920488
Unique NameFC920488
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920488_ssr21 microsatellite FC920488_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 55/187 (29.41%), Postives = 89/187 (47.59%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVKGANTQ-WLSM 686
            W+ A AT+YG    +G    GGACG+ N     +   T+  +  +F +G  CG+C++++C   P  C+     ++IT  N+ P +              + HFDL+   F  +A+         AGI+ + ++RVPC    G++ T +     N     VLV    G GD+V+V +  AN+Q W  M
Sbjct:   42 WEVARATWYGAPTGAGPDDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPA-CSGNPETVIITDMNYYPVS--------------KYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPC-NFPGLKVTFHVEEGSNPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPM 212          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 67/220 (30.45%), Postives = 100/220 (45.45%), Query Frame = 3
Query:   78 LFRMLCFFSVALSLFATANAKIPGVFAG-GPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA------QYR-AGIVPVSYRRVPCRKRG-GIRFTINGFRYFN--LVLVTNVAGAGDIVRVSVKGA--NTQWLSMSRN 695
            LF + C        F+     I         W  A +T+YG     G+ GGACGYGN  +Q  +    +A   +LF +G  CGAC+++KC      C+  NP + +  T+ CP            C     HFDL+   F  +A      Q R  G + + Y++V C   G  + F ++     N   VLV  V G G+I R+ +K A  + +WLSMS++
Sbjct:   16 LFALTCLLLNLTHCFSPKKFNISAATTSDSDWSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSA-CSK-NP-VTVVITDECP-----------GCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQS 221          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 57/183 (31.15%), Postives = 89/183 (48.63%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTINGFR---YFNLVLVTNVAGAGDIVRVSVKGANT 671
            GPW  A AT+YG  + +G    GGACG+ +     +   T+  +  LF +G  CG+C++++C  D Q C+  +  ++IT  N+ P     P            HFDL+   F +LA+         +GI+ + + RVPC   G  I F +  +    YF  VLV    G GD+V+V +  + T
Sbjct:   53 GPWTKARATWYGQPNGAGPDDNGGACGFKHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKD-QSCSGRSETVIITDMNYYP---VAPF-----------HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF-AVLVEYEDGDGDVVQVDLMESKT 219          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 61/180 (33.89%), Postives = 84/180 (46.67%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAIL-ITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTIN---GFRYFNLVLVTNVAGAGDIVRVSVK 659
            G  W  A AT+YG    +G    GG CGY ++    +    A  +  +F +GL CG+CFE+KC   P  C+ G P ++ IT  N+ P                  HFDLA   F  +A+        +AGI+ + +RRV C+    + F +    G  Y  L LV  V G GDIV V VK
Sbjct:   47 GKDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC-DKPVECS-GKPVVVHITDMNYEP--------------IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSKVTFHLEKGCGPNYLAL-LVKYVDGDGDIVAVDVK 209          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB9_MAIZE (Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 61/191 (31.94%), Postives = 90/191 (47.12%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNP-AILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVKG-ANTQWLSM 686
            G W +A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  CG+C+E++C   P+ C+ GNP  + IT  N+                P  P HFDL+   F  LA+          GI+ V +RRV C+   G +   +  +  N     VLV  VA  GDIV + ++   + +W  M
Sbjct:   41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CS-GNPVTVFITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYVAVLVKFVADDGDIVLMEIQDKLSAEWKPM 214          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB1_MAIZE (Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 61/191 (31.94%), Postives = 90/191 (47.12%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNP-AILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVKG-ANTQWLSM 686
            G W +A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  CG+C+E++C   P+ C+ GNP  + IT  N+                P  P HFDL+   F  LA+          GI+ V +RRV C+   G +   +  +  N     VLV  VA  GDIV + ++   + +W  M
Sbjct:   41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CS-GNPVTVYITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPM 214          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 56/178 (31.46%), Postives = 80/178 (44.94%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN--LVLVTNVAGAGDIVRVSVK 659
            G  W  A AT+YG    +G    GG CGY ++    +    A  +  +F +GL CG+CFE+KC   P  C+     + IT  N+ P                  HFDLA   F  +A+        +AGI+ + +RRV C+    + F +      N   +LV  V G GDIV V +K
Sbjct:   46 GSDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC-DKPAECSGKPVVVYITDMNYEP--------------IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSKVTFHLEKGCNPNYLALLVKYVDGDGDIVAVDIK 208          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 56/195 (28.72%), Postives = 86/195 (44.10%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTI--NGFRYFNLVLVTNVAGAGDIVRVSVK-------GANTQWLSM 686
            G  W  A AT+YG    +G    GGACG+ N+    +   T+  +  +F +G  CG+C++++C  DP  C+     ++IT  N+ P                R HFDL+   F  +A+         +GI+ + +RRVPC   G  I F +       +  VLV      GD+V+V +        GA   W  M
Sbjct:   41 GSGWLPARATWYGAPTGAGPDDNGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPS-CSGNIETVIITDMNYYP--------------VARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGSNPVYFAVLVEYEDLDGDVVQVDLMESKSAYGGATGVWTPM 220          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 51/163 (31.29%), Postives = 77/163 (47.24%), Query Frame = 3
Query:  102 SVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG 563
            ++ LS+ AT      GV     W  A AT+YG  + +G    GGACG+ N     +   T+  +  LF +G  CGAC++++C  +P  C+     ++IT  N+ P                R HFDL+   F  +A+         AGI+ + +RRVPC  RG
Sbjct:   10 AMLLSVLATYGFAA-GVVYTNDWLPAKATWYGQPNGAGPDDNGGACGFKNTNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPS-CSGQPRTVIITDMNYYP--------------VARYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRG 156          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 56/201 (27.86%), Postives = 89/201 (44.28%), Query Frame = 3
Query:  105 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRG-GIRFTINGFRY---FNLVLVTNVAGAGDIVRVSVKGAN-TQWLSMSR 692
            V L LF      +P +     + ++ AT+YG  D      G CGYG           + +S  L+NNG  CGAC++++C   P     G   + + AT+      +   D   +   P+ +  +A P   +   Y  G+V V Y+R+PCR  G  + + I+   Y   +  +LV  V G  DI+ V V   +  +W  M R
Sbjct:    6 VLLLLFVQVIVLLPLLCLSDDFVNSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPHCSEEG---VYVVATD------SGEGDGTDFILSPKAYGRMARP-GTENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRR 196          
The following BLAST results are available for this feature:
BLAST of FC920488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EXPB3_ORYSJ6.145e-1429.41Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB2_ARATH8.026e-1430.45Putative expansin-B2 OS=Arabidopsis thaliana GN=EX... [more]
EXPB4_ORYSJ1.788e-1331.15Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB10_MAIZE3.050e-1333.89Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2[more]
EXPB9_MAIZE3.983e-1331.94Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2[more]
EXPB1_MAIZE3.983e-1331.94Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2[more]
EXB11_MAIZE5.202e-1331.46Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1[more]
EXPB6_ORYSJ6.794e-1328.72Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB2_ORYSJ6.794e-1331.29Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXLB1_ARATH6.794e-1327.86Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32009A09EF RVDevelop1 Citrus clementina cDNA clone C32009A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920488 ID=FC920488; Name=FC920488; organism=Citrus clementina; type=EST; length=695bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAA
CTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCA
ACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTC
GCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCTG
CAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTCA
ACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGTG
AGCGTGAAAGGGGCCAACACCCAATGGCTGAGCATGAGCCGCAAC
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