FC920488

Overview
NameFC920488
Unique NameFC920488
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920488_ssr21 microsatellite FC920488_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 54/180 (30.00%), Postives = 84/180 (46.67%), Query Frame = 3
Query:  165 PWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVKGA 665
            PW  A AT+YG    SG+   GGACG  N+    Y    +  +  +F +G  CG+C+E+KC   P  C+     + IT  N+ P +                HFD +   F  +A         +AGI+ + +RRV C+  GG + T +  +  N     VLV  VA  GD++++ ++ A
Sbjct:   42 PWLPARATWYGQPYGSGSTDNGGACGIKNVNLPPYNGMISCGNVPIFKDGRGCGSCYEVKC-EQPAACSKQPVTVFITDMNYEPIS--------------AYHFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKFVADDGDVIQMDLQEA 206          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB5_ARATH (Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 63/217 (29.03%), Postives = 89/217 (41.01%), Query Frame = 3
Query:   72 MALFRMLCF-FSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG---GIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSM 686
            MA   + CF F V L+ F   + K         W +A  T+YG  +  GT GGACGYG+  ++  Y    +A   +LF +G  CGAC+ LKC  D   C      ++I             SD    C     HFDL+   F  LA+          G + VSY+R  C+       I        Y+    V    G G+   + V+ A  Q++ M
Sbjct:    1 MASSSLKCFSFIVVLTTFFAISLKPCYCHNKTHWNTAGITWYGDREGPGTTGGACGYGDAVAKHPYRCMVSAGGPSLFKDGKGCGACYRLKC--DHPLCTKKPIKVMI-------------SDECPGCTKESVHFDLSGKAFGALAKRGKGDQLRNLGELKVSYKRACCKHPKTMIAIHVDAGANPYYMSFAVKFANGDGNFACIEVQPAGGQYMKM 202          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB1_ORYSJ (Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 57/194 (29.38%), Postives = 90/194 (46.39%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGY-GVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK-GANTQWLSMSRN 695
            G  W  A AT+YG    +G    GGACGY ++    + G+N+   +  +F +G  CG+CFE+KC   P+ C+     I +T  N  P                  HFDL+   F  +A+        +AGI+   +RRV C+     + T +  +  N     +LV  VAG GD+V V +K   + +W ++  +
Sbjct:   38 GDKWLEAKATWYGAPKGAGPKDNGGACGYKDVDKAPFLGMNSCG-NDPIFKDGKGCGSCFEIKC-SKPEACSDKPALIHVTDMNDEP--------------IAAYHFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVKCKYPADTKITFHIEKASNPNYLALLVKYVAGDGDVVEVEIKEKGSEEWKALKES 215          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: MPAL1_LOLPR (Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 58/194 (29.90%), Postives = 90/194 (46.39%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK-GANTQWLSMSRN 695
            G  W  A +T+YG    +G    GGACGY N+    +   T   +T +F +G  CG+CFE+KC   P+ C+    A+ +T T+          DN     P  P HFDL+   F  +A+         AG + + +RRV C+     + T +  +  N     +LV  V G GD+V V +K     +W+ +  +
Sbjct:   38 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKNVDKAPFNGMTGCGNTPIFKDGRGCGSCFEIKC-TKPESCS--GEAVTVTITD----------DNE---EPIAPYHFDLSGHAFGSMAKKGEEQNVRSAGELELQFRRVKCKYPDDTKPTFHVEKASNPNYLAILVKYVDGDGDVVAVDIKEKGKDKWIELKES 215          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 54/188 (28.72%), Postives = 84/188 (44.68%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG---GIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANT---QWLSM 686
            W +A AT+YG  + +G    GGACG+  +    +   T+  +  L+  G  CG+C+ ++C  +P  C+     + IT  N+ P +              + HFDL+   F +LA+        RAGI+ V + RVPC   G   G          +  VLV    G GD+ +V +K A     +W  M
Sbjct:   48 WGNAKATWYGQPNGAGAADNGGACGFKKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPA-CSGNAQTVAITDMNYFPLS--------------QYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSSPVYLAVLVEYENGDGDVAQVDLKEAGAGGGRWTPM 220          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: EXB10_ORYSJ (Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 57/181 (31.49%), Postives = 85/181 (46.96%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGY-GVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK 659
            G  W  A  T+YG    +G    GGACGY ++    + G+N+   +  +F +G  CG+CFE+KC   P+ C+     I IT  N  P                  HFDL+   F  +A+        +AGI+ + +RRV C+  G  + T +  +  N     VLV  V G GD+V+V +K
Sbjct:   38 GKQWLEARGTWYGKPKGAGPDDNGGACGYKDIDKAPFLGMNSCG-NDPIFKDGKGCGSCFEVKC-SKPEACSDKPVIIHITDMNTEP--------------IAAYHFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVRCKYPGETKVTFHVEKGSNPNYFAVLVKYVGGDGDVVKVELK 202          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: MPAC1_CYNDA (Major pollen allergen Cyn d 1 OS=Cynodon dactylon GN=CYND1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 54/181 (29.83%), Postives = 83/181 (45.86%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSD---ASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTIN----GFRYFNLVLVTNVAGAGDIVRVSVK 659
            G  W  A ATFYG +    A    GGACGY ++    +   TA  +  +F +GL C AC+E+KC  +P  C+     + IT  N+               +    HFDL+   F  +A+        +AG + + +RRV C+   G + T +       ++  +LV   AG G+IV V +K
Sbjct:   15 GSKWLEARATFYGSNPRGAAPDDHGGACGYKDVDKPPFDGMTACGNEPIFKDGLGCRACYEIKC-KEPVECSGEPVLVKITDKNY--------------EHIAAYHFDLSGKAFGAMAKKGQEDKLRKAGELTLQFRRVKCKYPSGTKITFHIEKGSNDHYLALLVKYAAGDGNIVAVDIK 180          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: MPAP1_PHLPR (Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLPI PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 58/195 (29.74%), Postives = 90/195 (46.15%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAIL-ITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK-GANTQWLSMSRN 695
            G  W  A +T+YG    +G    GGACGY ++    +   T   +T +F +G  CG+CFE+KC   P+ C+ G P ++ IT  N                 P  P HFDL+   F  +A+         AG + + +RRV C+   G + T +  +  N     +LV  V G GD+V V +K     +W+ +  +
Sbjct:   38 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKC-TKPEACS-GEPVVVHITDDNE---------------EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKES 215          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: MPAP1_PHAAQ (Major pollen allergen Pha a 1 OS=Phalaris aquatica PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK-GANTQWLSMSRN 695
            G  W  A +T+YG    +G    GGACGY ++    +   T   +T +F +G  CG+CFELKC   P+ C+     + IT  N                 P  P HFDL+   F  +A+         AG + + +RRV C+   G + T +  +  N     +LV  V G GD+V V +K     +W+ +  +
Sbjct:   44 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKAPFNGMTGCGNTPIFKDGRGCGSCFELKC-SKPESCSGEPITVHITDDNE---------------EPIAPYHFDLSGHAFGSMAKKGEEENVRGAGELELQFRRVKCKYPDGTKPTFHVEKGSNPNYLALLVKYVDGDGDVVAVDIKEKGKDKWIELKES 221          
BLAST of FC920488 vs. ExPASy Swiss-Prot
Match: MPAH1_HOLLA (Major pollen allergen Hol l 1 OS=Holcus lanatus PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 55/194 (28.35%), Postives = 87/194 (44.85%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK-GANTQWLSMSRN 695
            G  W  A +T+YG    +G    GGACGY ++    +   T   +T +F +G  CG+CFE+KC   P+ C+     + IT  N                 P  P HFDL+   F  +A+         AG + + +RRV C+   G + T +  +  N     +LV  + G GD+V V +K     +W+ +  +
Sbjct:   40 GDEWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKDGRGCGSCFEIKC-TKPESCSGEPVTVHITDDNE---------------EPIAPYHFDLSGHAFGSMAKKGEEQKLRSAGELELKFRRVKCKYPDGTKPTFHVEKGSNPNYLALLVKYIDGDGDVVAVDIKEKGKDKWIELKES 217          
The following BLAST results are available for this feature:
BLAST of FC920488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EXPB9_ORYSJ1.514e-1230.00Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB5_ARATH1.514e-1229.03Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 ... [more]
EXPB1_ORYSJ1.977e-1229.38Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
MPAL1_LOLPR2.582e-1229.90Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=... [more]
EXPB8_ORYSJ2.582e-1228.72Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB10_ORYSJ4.404e-1231.49Expansin-B10 OS=Oryza sativa subsp. japonica GN=EX... [more]
MPAC1_CYNDA5.752e-1229.83Major pollen allergen Cyn d 1 OS=Cynodon dactylon ... [more]
MPAP1_PHLPR7.512e-1229.74Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLP... [more]
MPAP1_PHAAQ7.512e-1229.38Major pollen allergen Pha a 1 OS=Phalaris aquatica... [more]
MPAH1_HOLLA1.674e-1128.35Major pollen allergen Hol l 1 OS=Holcus lanatus PE... [more]

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Properties
Property NameValue
Genbank descriptionC32009A09EF RVDevelop1 Citrus clementina cDNA clone C32009A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920488 ID=FC920488; Name=FC920488; organism=Citrus clementina; type=EST; length=695bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAA
CTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCA
ACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTC
GCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCTG
CAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTCA
ACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGTG
AGCGTGAAAGGGGCCAACACCCAATGGCTGAGCATGAGCCGCAAC
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