FC920489

Overview
NameFC920489
Unique NameFC920489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11415 contig Ccv1_Contig11415:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: RPN8_YEAST (26S proteasome regulatory subunit RPN8 OS=Saccharomyces cerevisiae GN=RPN8 PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 1.801e-51
Identity = 98/191 (51.31%), Postives = 138/191 (72.25%), Query Frame = 2
Query:  140 EKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVP-NPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLQ 709
            EKV + PLVLLS +D+Y R      KR VGV+LG +   T+ V+NS+A+PFEED+K+  +WFLDHNY E+M  M K+INAKE ++GWY +GPKLR +DL I++LF  Y   NP+L+I+DV+ + +G+PT AY  +E+VK++ T  ++K F+H+P  I A E EEIGVEHLLRDV+D     L+  +T +L+
Sbjct:    6 EKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLPTDAYVAIEQVKDDGT-STEKTFLHLPCTIEAEEAEEIGVEHLLRDVRDQAAGGLSIRLTNQLK 195          
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: EIF3F_ARATH (Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.100e-19
Identity = 60/187 (32.09%), Postives = 97/187 (51.87%), Query Frame = 2
Query:  152 VHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFK-GTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVH---VPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTG 700
            +HPLV+ ++ D + R   D+ +RV+G LLGS    GTVD+ NSYAVP  E      +   D +YH +M +   ++N+KE +VGWYSTG  +      IH  +   VPNP+ + +D          KA+     V  N +   +++  H   +P ++   + E +G + L    K T++  L N++ G
Sbjct:   30 IHPLVIFNVCDCFVR-RPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV---DIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAF-----VSSNLSLGDRQLVAHFQEIPVDLRMVDAERVGFDVL----KATSVDKLPNDLEG 203          
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: EIF3F_PANTR (Eukaryotic translation initiation factor 3 subunit F OS=Pan troglodytes GN=EIF3F PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 50/169 (29.59%), Postives = 96/169 (56.80%), Query Frame = 2
Query:  146 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 652
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++
Sbjct:   96 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK 258          
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: EIF3F_MACFA (Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 50/169 (29.59%), Postives = 96/169 (56.80%), Query Frame = 2
Query:  146 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 652
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++
Sbjct:   96 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK 258          
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: EIF3F_HUMAN (Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 50/169 (29.59%), Postives = 96/169 (56.80%), Query Frame = 2
Query:  146 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 652
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++
Sbjct:   92 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK 254          
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: EI3F1_DROMO (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila mojavensis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 55/171 (32.16%), Postives = 94/171 (54.97%), Query Frame = 2
Query:  146 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 658
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++NA E+VVGW++TG ++  +   IH+ +     NPV + +D   +   +  +AY  ++        K+  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNANENVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQSGRMGLRAYICIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: EIF3F_MOUSE (Eukaryotic translation initiation factor 3 subunit F OS=Mus musculus GN=Eif3f PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 50/169 (29.59%), Postives = 96/169 (56.80%), Query Frame = 2
Query:  146 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 652
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++
Sbjct:   96 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSRESPNPIHLTVDTGLQHGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK 258          
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: EI3F1_DROWI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila willistoni GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 56/171 (32.75%), Postives = 93/171 (54.39%), Query Frame = 2
Query:  146 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 658
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N+ E VVGW++TG ++  +   IH+ +     NPV V +D   +   +  +AY  ++        KS  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYELNRKVNSNESVVGWWATGNEVTNHSSVIHEYYARECNNPVHVTVDTSLQGGRMGLRAYVCIQLGVPGG--KSGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: EI3F1_DROVI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila virilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 55/171 (32.16%), Postives = 93/171 (54.39%), Query Frame = 2
Query:  146 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 658
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++NA E VVGW++TG ++  +   IH+ +     NPV + +D   +   +  +AY  ++        K+  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNANESVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: EI3F1_DROAN (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila ananassae GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 56/171 (32.75%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  146 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 658
            V VHP+VL  +VD Y R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N  E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  +AY  ++        KS  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAYERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNPNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGG--KSGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
The following BLAST results are available for this feature:
BLAST of FC920489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPN8_YEAST1.801e-5151.3126S proteasome regulatory subunit RPN8 OS=Saccharo... [more]
EIF3F_ARATH3.100e-1932.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PANTR2.010e-1829.59Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MACFA2.010e-1829.59Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_HUMAN2.010e-1829.59Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROMO4.477e-1832.16Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MOUSE5.847e-1829.59Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROWI5.847e-1832.75Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROVI1.303e-1732.16Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROAN1.303e-1732.75Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC32009A11EF RVDevelop1 Citrus clementina cDNA clone C32009A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920489 ID=FC920489; Name=FC920489; organism=Citrus clementina; type=EST; length=732bp
GGTCAACAAAGCCATAAAAAGAAAAATCAACTGAGAAGGGGTTTTAAGTA
CAGACTACAGAGAGCAAAAGTGACAACAAACACAGAGAGATTCGAATATG
GACGTGATAAAGACGCAGCAAATTTCATCGAGACCCATAGAGAAGGTCAT
AGTTCACCCGCTCGTCTTACTAAGCATCGTCGACAATTACAACCGCGTCG
CCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCCTCGGTAGCTCCTTC
AAAGGCACCGTCGATGTCTCCAACAGCTACGCAGTGCCTTTTGAGGAAGA
TGACAAAGACCCAGGAATATGGTTTCTCGACCACAACTACCATGAATCAA
TGTATTCAATGTTCAAAAGAATCAATGCCAAGGAGCATGTCGTAGGTTGG
TACAGTACAGGACCCAAGCTACGAGAGAATGATCTTGACATTCACCAATT
ATTTCACAACTATGTCCCAAATCCTGTATTGGTCATTATTGATGTCCAAC
CAAAGGAGCTTGGAATACCCACCAAGGCTTACTATGATGTTGAGGAGGTT
AAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGTACACGTGCCATC
AGAAATTGCCGCTCATGAAGTCGAAGAAATCGGAGTGGAGCACTTGCTAA
GGGACGTGAAAGACACCACCATCAGTACACTTGCAAATGAGGTCACTGGA
AAACTACAGCCCTAAGGGTCTGGATGCTCGTT
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