FC920489
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila persimilis GN=eIF3-S5-1 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16 Identity = 52/171 (30.41%), Postives = 92/171 (53.80%), Query Frame = 2 Query: 146 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 658 V VHP+VL +VD + R ++ RV+G LLGS KG V+V+N + VP +E D + +Y MY + +++N+ E VVGW++TG + + IH+ + NPV + +D + + ++Y ++ K+ +F +P E+ ++E E G++ L + V Sbjct: 8 VRVHPVVLFQVVDAFERRNAESH-RVIGTLLGSVEKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: EIF3F_BOMMO (Eukaryotic translation initiation factor 3 subunit F OS=Bombyx mori GN=eIF3-S5 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15 Identity = 53/165 (32.12%), Postives = 84/165 (50.91%), Query Frame = 2 Query: 146 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 640 V VHP+VL IVD Y R D+ RV+G L G+S KG V+V+N + VP +E + NY +Y + +R+N+ E +VGW++TG ++ + IH+ + PV V +D + +AY V N Q +F V + +E E +G++ Sbjct: 7 VKVHPVVLFQIVDAYERRNADSH-RVIGTLWGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGC--MFTPVDVTLTCYEPEIVGLQ 165
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: EIF3F_USTMA (Eukaryotic translation initiation factor 3 subunit F OS=Ustilago maydis GN=UM00175 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14 Identity = 56/168 (33.33%), Postives = 89/168 (52.98%), Query Frame = 2 Query: 128 SRPIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLF------HNYVPNPVLVIID-VQPKELGIPTKAYYDVEEVKENATQKSQK-VFVHVPSEI 607 SR + V VHP+ L SI+D+Y R D + RV+G LLG+ + +++ N +AVP ED ++ + +D YH SMY + +++ E +VGWY+T P+L I + H V + ID +P LGI K+Y AT K++ VF+ +P+ + Sbjct: 26 SRSVTGVHVHPVALFSILDHYLR-RNDGQHRVIGTLLGTRTESEIEIKNCFAVPHLEDAEEGQVQ-VDMEYHRSMYELCQKVRPDEVIVGWYATSPELNTYSALIQDFYSRETAPHQAVHLTMDTTIDGSKPSGLGI--KSYI---SSPLGATPKAENCVFLPLPTNL 186
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: CSN6_DICDI (COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum GN=csn6 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13 Identity = 55/196 (28.06%), Postives = 96/196 (48.98%), Query Frame = 2 Query: 80 TQRDSNMDVIKTQQISSRPIEKVIVHPLVLLSIVDNYNRVAKDTRK----RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDV-QPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 652 T D+N V++ SS +V +HPLVL++I D++ R + RV+GV+LG V++ NS+ + + DK LD Y Y +++ ++GWYSTG ++ ++D+ +H+ + +P+ +++D PK +P Y E + +FV P +I E E IGV H+ + Sbjct: 8 TTTDANKLVLEKSANSSGL--EVDLHPLVLINISDHFTRTKVQSNYQDNCRVIGVILGVQNGRNVEICNSFEMVYATVDKQ---LVLDIEYLRKKY---EQLFPLYDLLGWYSTGSQVSKDDILLHKQISEHNESPLYLMLDTDSPKSKDLPVIIY---ESELHIVNDEPTTIFVKTPYKIQTGEAERIGVNHIAK 192
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: EIF3F_MALGO (Eukaryotic translation initiation factor 3 subunit F OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=MGL_1945 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13 Identity = 56/184 (30.43%), Postives = 88/184 (47.83%), Query Frame = 2 Query: 128 SRPIEKVIVHPLVLLSIVDNYNRVAKD-TRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDI----------HQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL 646 SR I V VHP+ L SI+D+Y R +D ++ RV+G LLG+ + V+V N++AVP E +DP LD +H M + R+ E V+GWYST +L N I HQ H + + +V + G+ + Y V + + F+ +P+ + E+ + HL Sbjct: 27 SRSITAVKVHPVALFSILDHYLR--RDVSQPRVIGTLLGTRSESEVEVRNAFAVPHGES-QDPWQIHLDAEHHRRMLDLHLRVRPDEVVLGWYSTNTELNSNSALIQDHYSRETAPHQAIH------LTLNTNVADEANGLGVQCY--VSALLGAMAKPEDCAFLSLPTHLLMSTPEQTALRHL 199
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: CSN6B_ARATH (COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana GN=CSN6B PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13 Identity = 51/189 (26.98%), Postives = 86/189 (45.50%), Query Frame = 2 Query: 152 VHPLVLLSIVDNYNRVAKDTRK----------------------RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL 646 +HPLV+L+I D++ RV RV G ++G TV++ NS+ + F DP + LD ++ E ++K++ +V+GWYSTG E+D+ IH+ + +PV V+++ + + +P Y V + Q +FVH I E E I V+H+ Sbjct: 13 LHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADAMLLQNPRVYGCVIGLQRGRTVEIFNSFELIF-----DPALDTLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDATESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGI---PQSIFVHTSYTIETVEAERISVDHV 193
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: EIF3F_DICDI (Eukaryotic translation initiation factor 3 subunit F OS=Dictyostelium discoideum GN=eif3f PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12 Identity = 50/189 (26.46%), Postives = 93/189 (49.21%), Query Frame = 2 Query: 146 VIVHPLVLLSIVDNYNR--VAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPN--PVLVIID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEV 694 V VHP+V+ +I+D+Y R V +D RV+G LLG + G +++ N + V E ++ ++ Y M + + + +E ++GWY+TG + EN + I+ + + + N P+ + +D + +GI Y + N F +P EI E E G+E + + D ++L +E+ Sbjct: 15 VKVHPVVIFNILDHYIRRNVGQD---RVIGTLLGFNNDGVLEIRNCFPVVHSETEQIA----VEMEYQRKMLDLHLKSSPREPIIGWYATGNDINENSVHINNFYRDEMGNSTPIHLTVDTGLTNDTMGIHA---YMAHNLSLNPESSLGSYFSQLPLEILTFEAENAGLESIAQTKYDQQSTSLLSEL 193
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: CSN6A_ARATH (COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana GN=CSN6A PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12 Identity = 48/189 (25.40%), Postives = 84/189 (44.44%), Query Frame = 2 Query: 152 VHPLVLLSIVDNYNRVAKDTRK----------------------RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL 646 +HPLV+++I D+Y RV RV G ++G TV++ NS+ + + DP LD ++ E ++K++ +++GWYSTG E+D+ IH+ + +PV V+++ + + +P Y V + Q +F H I E E I V+H+ Sbjct: 13 LHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYGCVIGVQRGRTVEIFNSFELLY-----DPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGI---PQLIFAHTSYTIETVEAERISVDHV 193
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: CSN6_XENLA (COP9 signalosome complex subunit 6 OS=Xenopus laevis GN=cops6 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12 Identity = 42/171 (24.56%), Postives = 85/171 (49.71%), Query Frame = 2 Query: 146 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 652 V +HPLV+L+I D++ R+ + +V+G L+G ++V NS+ + + +D+ I + Y+ + FK++ +GWY+TG +D+ +H+ + +P+ + ++ K +P Y E V + ++ + + +A E E IGV+H+ R Sbjct: 32 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSQINDEKITI---NKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVY---ESVIDIVNGEATMLLAELSYTLATEEAERIGVDHVAR 196
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: CSN6_PONAB (COP9 signalosome complex subunit 6 OS=Pongo abelii GN=COPS6 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11 Identity = 41/171 (23.98%), Postives = 85/171 (49.71%), Query Frame = 2 Query: 146 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 652 V +HPLV+L+I D++ R+ + +V+G L+G ++V NS+ + ++ +D Y+ + FK++ + +GWY+TG +D+ +H+ + +P+ + ++ K +P + E V + ++ +F + +A E E IGV+H+ R Sbjct: 42 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVAR 206 The following BLAST results are available for this feature:
BLAST of FC920489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920489 ID=FC920489; Name=FC920489; organism=Citrus clementina; type=EST; length=732bpback to top |