FC920489

Overview
NameFC920489
Unique NameFC920489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11415 contig Ccv1_Contig11415:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: CSN6_PIG (COP9 signalosome complex subunit 6 OS=Sus scrofa GN=COPS6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 41/171 (23.98%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  146 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 652
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R
Sbjct:   37 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVAR 201          
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: CSN6_MOUSE (COP9 signalosome complex subunit 6 OS=Mus musculus GN=Cops6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 41/171 (23.98%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  146 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 652
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R
Sbjct:   38 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVAR 202          
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: CSN6_HUMAN (COP9 signalosome complex subunit 6 OS=Homo sapiens GN=COPS6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 41/171 (23.98%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  146 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 652
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R
Sbjct:   41 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVAR 205          
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: CSN6_BOVIN (COP9 signalosome complex subunit 6 OS=Bos taurus GN=COPS6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 41/171 (23.98%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  146 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 652
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R
Sbjct:   38 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELDFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVAR 202          
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: CSN6_XENTR (COP9 signalosome complex subunit 6 OS=Xenopus tropicalis GN=cops6 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 41/171 (23.98%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  146 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 652
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +  + +++   I   +  Y+ +    FK++      +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   Y   E V +    ++  +   +   +A  E E IGV+H+ R
Sbjct:   33 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSQINEEKITI---NKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVY---ESVIDIVNGEATMLLAELSYTLATEEAERIGVDHVAR 197          
BLAST of FC920489 vs. ExPASy Swiss-Prot
Match: EI3F2_DROAN (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila ananassae GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 47/167 (28.14%), Postives = 82/167 (49.10%), Query Frame = 2
Query:  143 KVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPN--PVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGV 637
            KV++ PLVL  I+D+Y R  KD   +++G LLG S    + ++N + V   ++  D     LD  Y   M  + +    +E V+GW+STG  +  + L +H  +     +  P+ +++D   K   + T+ Y  VE      T+    +F  VP E+A+   E + +
Sbjct:   10 KVVLQPLVLFQIIDSYERRPKDA-TQIIGTLLGRSNGKEITITNCFTV-LHKEHPDSARIDLDLGYANDMLELNQLTYPQEKVLGWFSTGKSVSRSALLLHDYYSRECSDGQPLHLLVDATLKGQRLSTRLYCGVEMGVPGGTK--GLMFSLVPLEMASDSAEMVAL 172          
The following BLAST results are available for this feature:
BLAST of FC920489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CSN6_PIG1.068e-1123.98COP9 signalosome complex subunit 6 OS=Sus scrofa G... [more]
CSN6_MOUSE1.068e-1123.98COP9 signalosome complex subunit 6 OS=Mus musculus... [more]
CSN6_HUMAN1.068e-1123.98COP9 signalosome complex subunit 6 OS=Homo sapiens... [more]
CSN6_BOVIN1.395e-1123.98COP9 signalosome complex subunit 6 OS=Bos taurus G... [more]
CSN6_XENTR2.379e-1123.98COP9 signalosome complex subunit 6 OS=Xenopus trop... [more]
EI3F2_DROAN4.059e-1128.14Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC32009A11EF RVDevelop1 Citrus clementina cDNA clone C32009A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920489 ID=FC920489; Name=FC920489; organism=Citrus clementina; type=EST; length=732bp
GGTCAACAAAGCCATAAAAAGAAAAATCAACTGAGAAGGGGTTTTAAGTA
CAGACTACAGAGAGCAAAAGTGACAACAAACACAGAGAGATTCGAATATG
GACGTGATAAAGACGCAGCAAATTTCATCGAGACCCATAGAGAAGGTCAT
AGTTCACCCGCTCGTCTTACTAAGCATCGTCGACAATTACAACCGCGTCG
CCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCCTCGGTAGCTCCTTC
AAAGGCACCGTCGATGTCTCCAACAGCTACGCAGTGCCTTTTGAGGAAGA
TGACAAAGACCCAGGAATATGGTTTCTCGACCACAACTACCATGAATCAA
TGTATTCAATGTTCAAAAGAATCAATGCCAAGGAGCATGTCGTAGGTTGG
TACAGTACAGGACCCAAGCTACGAGAGAATGATCTTGACATTCACCAATT
ATTTCACAACTATGTCCCAAATCCTGTATTGGTCATTATTGATGTCCAAC
CAAAGGAGCTTGGAATACCCACCAAGGCTTACTATGATGTTGAGGAGGTT
AAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGTACACGTGCCATC
AGAAATTGCCGCTCATGAAGTCGAAGAAATCGGAGTGGAGCACTTGCTAA
GGGACGTGAAAGACACCACCATCAGTACACTTGCAAATGAGGTCACTGGA
AAACTACAGCCCTAAGGGTCTGGATGCTCGTT
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