FC920490

Overview
NameFC920490
Unique NameFC920490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: CDC48_CAPAN (Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +V Y+D+GG   Q  +IRE VELPL H +L+K IG+ PP+G+LLYGPPG+GK
Sbjct:  204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGK 255          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: CD48E_ARATH (Cell division control protein 48 homolog E OS=Arabidopsis thaliana GN=CDC48E PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +V Y+D+GG   Q  +IRE VELPL H +L+K IG+ PP+G+LLYGPPG+GK
Sbjct:  203 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGK 254          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: CD48D_ARATH (Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +V Y+D+GG   Q  +IRE VELPL H +L+K IG+ PP+G+LLYGPPG+GK
Sbjct:  204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGK 255          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: TERA2_CAEEL (Transitional endoplasmic reticulum ATPase homolog 2 OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  544 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +V Y+D+GG   Q  +I+E VELPL H +L+K IG+ PPRG+LL+GPPGTGK
Sbjct:  205 EVGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGPPGTGK 256          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: AFG2_SCHPO (ATPase family gene 2 protein OS=Schizosaccharomyces pombe GN=afg2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 1
Query:  535 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            E P+V ++DIGG +  KQ+++E+VE PLTH E + ++G+ PP+GVLLYGPPG  K
Sbjct:  541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSK 595          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: SPAT5_HUMAN (Spermatogenesis-associated protein 5 OS=Homo sapiens GN=SPATA5 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 1
Query:  529 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            Q  +  VTY+ IGG   Q + IRE +ELPL   EL+K  GI  PRGVLLYGPPGTGK
Sbjct:  344 QDNQFKVTYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRGVLLYGPPGTGK 400          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: SPAT5_MOUSE (Spermatogenesis-associated protein 5 OS=Mus musculus GN=Spata5 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  529 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            Q  +  VTY+ IGG + Q + IRE +ELPL   EL+K  GI  PRG+LLYGPPGTGK
Sbjct:  344 QDSQFKVTYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGK 400          
The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
CDC48_CAPAN1.552e-1259.62Cell division cycle protein 48 homolog OS=Capsicum... [more]
CD48E_ARATH1.552e-1259.62Cell division control protein 48 homolog E OS=Arab... [more]
CD48D_ARATH1.552e-1259.62Cell division control protein 48 homolog D OS=Arab... [more]
TERA2_CAEEL3.458e-1259.62Transitional endoplasmic reticulum ATPase homolog ... [more]
AFG2_SCHPO7.703e-1254.55ATPase family gene 2 protein OS=Schizosaccharomyce... [more]
SPAT5_HUMAN2.927e-1159.65Spermatogenesis-associated protein 5 OS=Homo sapie... [more]
SPAT5_MOUSE4.993e-1157.89Spermatogenesis-associated protein 5 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionC32009A12EF RVDevelop1 Citrus clementina cDNA clone C32009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bp
CTCGCCGGGGGACAATCATCAATCGACCAATCCTTCGTTACAATTTCTTG
CTGGTCACTCCAAATTCCTCTCAACAAAACAATGGCAGCCTCAGCGATGG
TTCTAGACCCGAAGCCAGTATCGGAGCCACCACCGTCAACAAGATCCGAT
CTGACGGAGCAATGGTCGGACGAAGACGACCTCTACAGCCGACTTAAATC
CCTGCAACGGCAGCTCGAGTTCATCGACATCCAAGAAGAGTACGTCAAAG
ACGAGCAAAAGAACTTGAAGCGTGAACTGCTACGCGCCCAGGAGGAGGTG
AAGCGGATCCAATCGGTGCCGTTGGTAATCGGACAGTTCATGGAGATGGT
GGACCAGAATAACGGCATCGTGGGGTCCACCACCGGCTCTAACTACTACG
TCAGGATTCTTAGCACTATTAATCGGGAGTTGTTGAAACCGTCCGCTTCC
GTCGCTCTCCACCGTCACTCTAACGCCCTTGTTGACGTTCTTCCGCCGGA
AGCCGATTCCAGTATTTCTCTTCTAAGCCAGTCCGAGAAGCCCGACGTTA
CTTATAATGATATTGGAGGATGTGATATTCAAAAGCAGGAAATTCGTGAG
GCTGTGGAGCTACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTAT
AGATCCTCCACGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAC
TA
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