FC920490

Overview
NameFC920490
Unique NameFC920490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.704e-35
Identity = 78/213 (36.62%), Postives = 130/213 (61.03%), Query Frame = 1
Query:  106 DPKPVSEPPPSTRSDLTEQWSDEDDLYSRLK-------------SLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            D K   EPP  TR    ++ +   D  S+L               L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+ IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGK
Sbjct:   20 DKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.704e-35
Identity = 78/213 (36.62%), Postives = 130/213 (61.03%), Query Frame = 1
Query:  106 DPKPVSEPPPSTRSDLTEQWSDEDDLYSRLK-------------SLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            D K   EPP  TR    ++ +   D  S+L               L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+ IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGK
Sbjct:   20 DKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.704e-35
Identity = 78/213 (36.62%), Postives = 130/213 (61.03%), Query Frame = 1
Query:  106 DPKPVSEPPPSTRSDLTEQWSDEDDLYSRLK-------------SLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            D K   EPP  TR    ++ +   D  S+L               L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+ IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGK
Sbjct:   20 DKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.226e-35
Identity = 78/213 (36.62%), Postives = 130/213 (61.03%), Query Frame = 1
Query:  106 DPKPVSEPPPSTRSDLTEQWSDEDDLYSR-------------LKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            D K   EPP  TR    ++ +   D  S+             L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+ IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGK
Sbjct:   20 DKKKKYEPPVPTRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.797e-35
Identity = 71/170 (41.76%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  190 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            R K+L+++LE    ++  +++E +  +  + + + +++R++  PL++G   E++D    IV S+TG  +   +  T++R  L+P A+VAL++ S A+VDVLP E DS +  +   E PDV+Y+DIGG D Q +EIRE VE PL   EL++++G++PP+GVLLYGPPGTGK
Sbjct:   57 RRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGK 226          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.958e-35
Identity = 73/166 (43.98%), Postives = 111/166 (66.87%), Query Frame = 1
Query:  202 LQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            L+R++  +++Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV +  G  + VRI   I R+ LKP + VAL + + A+V++LP E D S+      EKP VTY DIGG + Q  E+REAVELPL H EL++++GI+PP+GVLLYGPPG GK
Sbjct:   20 LKRRIRQLELQVRTLEADKERLERELSRLRTEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQDIGGLERQLAELREAVELPLKHPELFEKVGIEPPKGVLLYGPPGCGK 185          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.458e-35
Identity = 74/174 (42.53%), Postives = 115/174 (66.09%), Query Frame = 1
Query:  178 DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +L +R   L+ Q   ++ ++ YV+ ++   +REL + + E+++++S PLVIG   +++D +  IV S+ G  + VR    I+ +LLKP     L++ S A+VDVLP   D+ I  +   E P+ TY +IGG + Q +EIREAVELPLT  +L++++GI PP+GVLLYGPPGTGK
Sbjct:   27 NLENRNLELREQFRQMESEKRYVETQKIRYERELRKLKSEIEQLRSPPLVIGTVTDVIDNSRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPKGVLLYGPPGTGK 200          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.458e-35
Identity = 73/173 (42.20%), Postives = 117/173 (67.63%), Query Frame = 1
Query:  190 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            RL  L+R  +++ ++EE+V ++++ LK +  +A+E+   V  ++  P+ +G   E++D+N+ IV S+ G  YYV ILS ++++ L+P  S+ +H    ++V +L  E D  +S++   + P  +Y DIGG + Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGK
Sbjct:   64 RLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGK 235          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.458e-35
Identity = 73/173 (42.20%), Postives = 117/173 (67.63%), Query Frame = 1
Query:  190 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            RL  L+R  +++ ++EE+V ++++ LK +  +A+E+   V  ++  P+ +G   E++D+N+ IV S+ G  YYV ILS ++++ L+P  S+ +H    ++V +L  E D  +S++   + P  +Y DIGG + Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGK
Sbjct:   64 RLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGK 235          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.105e-34
Identity = 72/172 (41.86%), Postives = 118/172 (68.60%), Query Frame = 1
Query:  190 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +L  ++R  + + ++EE+V + +  K  +++    +++++ I+  PL IG   E++D ++ IV S T  +YYV ILS +++ELL+P  SV LH  + ++V VL  +AD  +S++   + P  +Y+DIGG + Q QEI+E+VELPLTH ELY+++GI PP+GV+LYG PGTGK
Sbjct:   58 KLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGK 229          
The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PRS4_RAT1.704e-3536.6226S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE1.704e-3536.6226S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN1.704e-3536.6226S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_CHICK2.226e-3536.6226S protease regulatory subunit 4 OS=Gallus gallus... [more]
PSMR_METKA3.797e-3541.76Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PSMR_THEGJ4.958e-3543.98Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_METMJ8.458e-3542.53Proteasome-activating nucleotidase OS=Methanoculle... [more]
PRS4B_ARATH8.458e-3542.2026S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4A_ARATH8.458e-3542.2026S proteasome regulatory subunit 4 homolog A OS=A... [more]
PRS4_YEAST1.105e-3441.8626S protease regulatory subunit 4 homolog OS=Sacch... [more]

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Properties
Property NameValue
Genbank descriptionC32009A12EF RVDevelop1 Citrus clementina cDNA clone C32009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bp
CTCGCCGGGGGACAATCATCAATCGACCAATCCTTCGTTACAATTTCTTG
CTGGTCACTCCAAATTCCTCTCAACAAAACAATGGCAGCCTCAGCGATGG
TTCTAGACCCGAAGCCAGTATCGGAGCCACCACCGTCAACAAGATCCGAT
CTGACGGAGCAATGGTCGGACGAAGACGACCTCTACAGCCGACTTAAATC
CCTGCAACGGCAGCTCGAGTTCATCGACATCCAAGAAGAGTACGTCAAAG
ACGAGCAAAAGAACTTGAAGCGTGAACTGCTACGCGCCCAGGAGGAGGTG
AAGCGGATCCAATCGGTGCCGTTGGTAATCGGACAGTTCATGGAGATGGT
GGACCAGAATAACGGCATCGTGGGGTCCACCACCGGCTCTAACTACTACG
TCAGGATTCTTAGCACTATTAATCGGGAGTTGTTGAAACCGTCCGCTTCC
GTCGCTCTCCACCGTCACTCTAACGCCCTTGTTGACGTTCTTCCGCCGGA
AGCCGATTCCAGTATTTCTCTTCTAAGCCAGTCCGAGAAGCCCGACGTTA
CTTATAATGATATTGGAGGATGTGATATTCAAAAGCAGGAAATTCGTGAG
GCTGTGGAGCTACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTAT
AGATCCTCCACGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAC
TA
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