FC920490
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.704e-35 Identity = 78/213 (36.62%), Postives = 130/213 (61.03%), Query Frame = 1 Query: 106 DPKPVSEPPPSTRSDLTEQWSDEDDLYSRLK-------------SLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 D K EPP TR ++ + D S+L L+R +++ ++EE++++++ K L+ + + +V ++ P+ +G E++D N+ IV ++ GS +YV ILS ++++LL+P SV L+ +A++ VL + D ++++ + P TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGK Sbjct: 20 DKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.704e-35 Identity = 78/213 (36.62%), Postives = 130/213 (61.03%), Query Frame = 1 Query: 106 DPKPVSEPPPSTRSDLTEQWSDEDDLYSRLK-------------SLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 D K EPP TR ++ + D S+L L+R +++ ++EE++++++ K L+ + + +V ++ P+ +G E++D N+ IV ++ GS +YV ILS ++++LL+P SV L+ +A++ VL + D ++++ + P TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGK Sbjct: 20 DKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.704e-35 Identity = 78/213 (36.62%), Postives = 130/213 (61.03%), Query Frame = 1 Query: 106 DPKPVSEPPPSTRSDLTEQWSDEDDLYSRLK-------------SLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 D K EPP TR ++ + D S+L L+R +++ ++EE++++++ K L+ + + +V ++ P+ +G E++D N+ IV ++ GS +YV ILS ++++LL+P SV L+ +A++ VL + D ++++ + P TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGK Sbjct: 20 DKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.226e-35 Identity = 78/213 (36.62%), Postives = 130/213 (61.03%), Query Frame = 1 Query: 106 DPKPVSEPPPSTRSDLTEQWSDEDDLYSR-------------LKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 D K EPP TR ++ + D S+ L L+R +++ ++EE++++++ K L+ + + +V ++ P+ +G E++D N+ IV ++ GS +YV ILS ++++LL+P SV L+ +A++ VL + D ++++ + P TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGK Sbjct: 20 DKKKKYEPPVPTRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.797e-35 Identity = 71/170 (41.76%), Postives = 116/170 (68.24%), Query Frame = 1 Query: 190 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 R K+L+++LE ++ +++E + + + + + +++R++ PL++G E++D IV S+TG + + T++R L+P A+VAL++ S A+VDVLP E DS + + E PDV+Y+DIGG D Q +EIRE VE PL EL++++G++PP+GVLLYGPPGTGK Sbjct: 57 RRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGK 226
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 4.958e-35 Identity = 73/166 (43.98%), Postives = 111/166 (66.87%), Query Frame = 1 Query: 202 LQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 L+R++ +++Q ++ +++ L+REL R + E+ R++ P G +E++D + IV + G + VRI I R+ LKP + VAL + + A+V++LP E D S+ EKP VTY DIGG + Q E+REAVELPL H EL++++GI+PP+GVLLYGPPG GK Sbjct: 20 LKRRIRQLELQVRTLEADKERLERELSRLRTEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQDIGGLERQLAELREAVELPLKHPELFEKVGIEPPKGVLLYGPPGCGK 185
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 8.458e-35 Identity = 74/174 (42.53%), Postives = 115/174 (66.09%), Query Frame = 1 Query: 178 DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 +L +R L+ Q ++ ++ YV+ ++ +REL + + E+++++S PLVIG +++D + IV S+ G + VR I+ +LLKP L++ S A+VDVLP D+ I + E P+ TY +IGG + Q +EIREAVELPLT +L++++GI PP+GVLLYGPPGTGK Sbjct: 27 NLENRNLELREQFRQMESEKRYVETQKIRYERELRKLKSEIEQLRSPPLVIGTVTDVIDNSRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPKGVLLYGPPGTGK 200
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 8.458e-35 Identity = 73/173 (42.20%), Postives = 117/173 (67.63%), Query Frame = 1 Query: 190 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 RL L+R +++ ++EE+V ++++ LK + +A+E+ V ++ P+ +G E++D+N+ IV S+ G YYV ILS ++++ L+P S+ +H ++V +L E D +S++ + P +Y DIGG + Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGK Sbjct: 64 RLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGK 235
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 8.458e-35 Identity = 73/173 (42.20%), Postives = 117/173 (67.63%), Query Frame = 1 Query: 190 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 RL L+R +++ ++EE+V ++++ LK + +A+E+ V ++ P+ +G E++D+N+ IV S+ G YYV ILS ++++ L+P S+ +H ++V +L E D +S++ + P +Y DIGG + Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGK Sbjct: 64 RLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGK 235
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3) HSP 1 Score: 146.747 bits (369), Expect = 1.105e-34 Identity = 72/172 (41.86%), Postives = 118/172 (68.60%), Query Frame = 1 Query: 190 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 +L ++R + + ++EE+V + + K +++ +++++ I+ PL IG E++D ++ IV S T +YYV ILS +++ELL+P SV LH + ++V VL +AD +S++ + P +Y+DIGG + Q QEI+E+VELPLTH ELY+++GI PP+GV+LYG PGTGK Sbjct: 58 KLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGK 229 The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 147
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bpback to top |