FC920490

Overview
NameFC920490
Unique NameFC920490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 62/171 (36.26%), Postives = 112/171 (65.50%), Query Frame = 1
Query:  187 SRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++  L+ ++  ++++ + V  E   +K+E    + E+ +++  PL++G  ++ V++   +V S+TG N+ V +   ++ E + P A V L++ + A+V+VLP E D     +   EKPD+++ DIGG + Q ++I+E VELPL + EL++++GI PP+GVLLYGPPGTGK
Sbjct:   25 TQIAELESKVLRLELKNKDVTRENVQIKKENEILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGK 195          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 61/171 (35.67%), Postives = 112/171 (65.50%), Query Frame = 1
Query:  187 SRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++  L+ ++  ++++ + +  E   +K+E    + E+ +++  PL++G  ++ V++   +V S+TG N+ V +   ++ E + P A V L++ + A+V+VLP E D     +   EKPD+++ DIGG + Q ++I+E VELPL + EL++++GI PP+GVLLYGPPGTGK
Sbjct:   25 TQIAELESKVLRLELKNKDISRENVQIKKENEILKRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGK 195          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 62/173 (35.84%), Postives = 110/173 (63.58%), Query Frame = 1
Query:  181 LYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            L  R   L+ +   I+++++ V++++   +RE+ +   E+ R+++ PL++G  ++++     I+ S+TG  + V     IN + + P A VAL++ S A+++VLP   D S+  +   + P++ Y  IGG + Q  E++E VELPL   EL++++GI+PP+GVLLYGPPGTGK
Sbjct:   34 LEERNVRLKEEYRKIELEKKSVENKKVQYEREIRKLTSELDRLKTPPLIVGTILDVMANGKMIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGIEPPKGVLLYGPPGTGK 206          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 60/171 (35.09%), Postives = 112/171 (65.50%), Query Frame = 1
Query:  187 SRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++  L+ ++  ++++ + +  E   +K+E    + E+ +++  PL++G  ++ V++   +V S+TG N+ V +   ++ + + P A V L++ + A+V+VLP E D     +   EKPD+++ DIGG + Q ++I+E VELPL + EL++++GI PP+GVLLYGPPGTGK
Sbjct:   25 TQIAELESKVLRLELKNKDISRENVQIKKENEILKRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPDDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGK 195          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 70/176 (39.77%), Postives = 108/176 (61.36%), Query Frame = 1
Query:  184 YSRLKSLQRQLEFID----IQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            Y +LK L   L   D    + E     E  N ++ +      V++++  PL +G   E VD ++GI+ +  G  YYV I+S ++++LL+P  +V L+   N++V VL  E D  ++++   + P  TY DIGG + Q QEI+E+VELPLT+ ELY+++GI PP+GV+LYG PGTGK
Sbjct:   47 YLKLKKLAHLLSLEDNILSLCEPDKSSEGSNSQKHV------VEQLRGSPLSVGTLEEFVDDHHGIITTGVGLEYYVNIMSFVDKDLLEPGCTVLLNYKDNSVVGVLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPELYQEMGIKPPKGVILYGLPGTGK 216          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 72/181 (39.78%), Postives = 111/181 (61.33%), Query Frame = 1
Query:  166 SDEDDLYSRLKSLQRQLEFIDIQEEYVKD---EQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            SDE D Y R K        + + EE ++    E + L+++L   + E++++ + P +    ++++     IV S++G N  V + S I+ + LKP + VAL +  + +V+VLP   D+ +      EKP+V Y+DIGG + Q  EIRE +ELPL + EL+K+IGIDPP+GVLLYGPPGTGK
Sbjct:    2 SDELDSY-RAKHYNSDDPIVRLLEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIVLDILPDGKVIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVKSFEVIEKPNVHYSDIGGLNEQINEIREVIELPLKNPELFKEIGIDPPKGVLLYGPPGTGK 181          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 61/169 (36.09%), Postives = 108/169 (63.91%), Query Frame = 1
Query:  193 LKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            L  L+ ++  ++++ + +  E   +K+E    + E+ +++  PL++G  ++ V++   +V S+TG N+ V +   +  + + P A V L++ + A+V+VLP E D     +   EKPD+ + DIGG + Q ++I+E VELPL + EL++++GI PP+GVLLYGPPGTGK
Sbjct:   27 LAELESKVLRLELKNKDITRENVQIKKENEILKRELDKLRIPPLILGTVLDRVNERKAVVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQTLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGK 195          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 62/165 (37.58%), Postives = 103/165 (62.42%), Query Frame = 1
Query:  226 DIQEEYVKDEQKNLKRELLRAQEEVK-------RIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            D++   +KD+ ++L +E +  Q+E++       ++ S P +    +E++D N  +V S+TG N  V + + ++   LKP A VAL+   + +VDVLP   D  +  +   E+P V + D+GG + Q +EI EAV LP+ +  L++++GIDPP+GVLL+GPPGTGK
Sbjct:   22 DVEIRILKDKVRSLTKEKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLHGPPGTGK 186          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.871e-28
Identity = 68/223 (30.49%), Postives = 120/223 (53.81%), Query Frame = 1
Query:  118 VSEPPPSTRSDLTEQWSDEDDLYSR-LKSLQRQLEFIDIQEEYVKDEQK-------NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNG---------------------IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +S PPP+  + +    +D+D L S   + + R    +D +   +KDE +       + K ++   QE++K  + +P ++G  +E+++ N                       ++ ++T    ++ ++  ++ E LKP   V +++ S  ++D LP E DS +  +   EKP   YNDIGG + Q QE+ EA+ LP+TH + ++++GI PP+GVLLYGPPGTGK
Sbjct:    1 MSSPPPAAAAAMAVDDADDDQLASMSTEDIVRATRLLDNETRVLKDELQRTNLEVESYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVIGLVDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGK 223          
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.914e-27
Identity = 57/172 (33.14%), Postives = 101/172 (58.72%), Query Frame = 1
Query:  190 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSIS--LLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699
            +++ L  +   +  +   +K +       +    E ++  + +P ++G  +E++D+++G+V ++T  + Y+ I   I    L+P   VALH+ +N + + LPP+ D  +   +L    KPD TY DIGG + Q +E+ EA+ L LTH E ++++ I PP+GVL+YGPPGTGK
Sbjct:   24 KIRMLNSETRILQSRVNTIKHDISTKNASIAENMERIRLNKQLPYLVGNVVEVLDEHSGVVNASTRMSSYLPITGLIPNSELRPGDLVALHKDTNIVFEKLPPDYDMKVGGMVLKSDAKPDETYEDIGGLERQIEELNEAIVLSLTHPERFEKLNIKPPKGVLMYGPPGTGK 195          
The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PSMR_METM74.803e-3036.26Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM64.803e-3035.67Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_UNCMA1.070e-2935.84Proteasome-activating nucleotidase OS=Uncultured m... [more]
PSMR_METM51.070e-2935.09Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS4_ENCCU1.070e-2939.7726S protease regulatory subunit 4 homolog OS=Encep... [more]
PSMR_SULTO3.113e-2939.78Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PSMR_METVS4.066e-2936.09Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_AERPE1.183e-2837.58Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PRS6A_ORYSJ5.871e-2830.4926S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS6A_ENCCU2.914e-2733.1426S protease regulatory subunit 6A OS=Encephalitoz... [more]

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Properties
Property NameValue
Genbank descriptionC32009A12EF RVDevelop1 Citrus clementina cDNA clone C32009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bp
CTCGCCGGGGGACAATCATCAATCGACCAATCCTTCGTTACAATTTCTTG
CTGGTCACTCCAAATTCCTCTCAACAAAACAATGGCAGCCTCAGCGATGG
TTCTAGACCCGAAGCCAGTATCGGAGCCACCACCGTCAACAAGATCCGAT
CTGACGGAGCAATGGTCGGACGAAGACGACCTCTACAGCCGACTTAAATC
CCTGCAACGGCAGCTCGAGTTCATCGACATCCAAGAAGAGTACGTCAAAG
ACGAGCAAAAGAACTTGAAGCGTGAACTGCTACGCGCCCAGGAGGAGGTG
AAGCGGATCCAATCGGTGCCGTTGGTAATCGGACAGTTCATGGAGATGGT
GGACCAGAATAACGGCATCGTGGGGTCCACCACCGGCTCTAACTACTACG
TCAGGATTCTTAGCACTATTAATCGGGAGTTGTTGAAACCGTCCGCTTCC
GTCGCTCTCCACCGTCACTCTAACGCCCTTGTTGACGTTCTTCCGCCGGA
AGCCGATTCCAGTATTTCTCTTCTAAGCCAGTCCGAGAAGCCCGACGTTA
CTTATAATGATATTGGAGGATGTGATATTCAAAAGCAGGAAATTCGTGAG
GCTGTGGAGCTACCGCTGACTCACCATGAGCTATACAAGCAAATTGGTAT
AGATCCTCCACGTGGTGTTTTACTTTATGGTCCTCCTGGAACTGGTAAAC
TA
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