FC920492

Overview
NameFC920492
Unique NameFC920492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15544 contig Ccv1_Contig15544:86..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATM_CHICK (Aspartate aminotransferase, mitochondrial OS=Gallus gallus GN=GOT2 PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 6.431e-59
Identity = 111/215 (51.63%), Postives = 147/215 (68.37%), Query Frame = 3
Query:   63 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            + S +  +   P DPILGVT A+ +DT+  K+NLGVGAYR + GK  VLN VRKAE ++   +   KEYLPI GL DF + SA+L LG +S A K  R  TVQ +SGTGSLRVGA FL R +     +Y+P+P+WGNH  +F  AGL ++ YRYYDP T  L+F G +ED+   P  +I+LLHACAHNPTGVDP  EQW+++  +++ + LL +F
Sbjct:   22 ASSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKSYVLNCVRKAEAMIAAKKMD-KEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYF 235          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC_BOVIN (Aspartate aminotransferase, cytoplasmic OS=Bos taurus GN=GOT1 PE=1 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 9.286e-58
Identity = 111/222 (50.00%), Postives = 148/222 (66.67%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            M   S+F ++ +A    +  +T  + +D  P K+NLGVGAYRT++ +P VL VVRK EQ + ND S   EYLPI+GL +F   +++L LG DSPA+++ RV  VQCL GTG+LR+GAEFLAR Y+        +Y+  PTW NH  VF  AG   +++Y Y+D A RGL+ QG L DL  AP  +I +LHACAHNPTG DPT EQW+QI  +M+ + L PFF
Sbjct:    1 MAPPSIFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDSQPWVLPVVRKVEQRIANDSSINHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQCLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFIAAGFKDIRSYHYWDAAKRGLDLQGFLNDLEKAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFF 222          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC_PONAB (Aspartate aminotransferase, cytoplasmic OS=Pongo abelii GN=GOT1 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.069e-57
Identity = 112/222 (50.45%), Postives = 149/222 (67.12%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            M   SVF ++ +A    +  +T  + +D  P K+NLGVGAYRT++  P VL VV+K EQ + ND S   EYLPI+GL +F   +++L LG DSPA+K+ RV  VQ L GTG+LR+GA+FLAR Y+        +Y+  PTW NH  VF+ AG   +++YRY+D   RGL+ QGLL DL  AP  +IV+LHACAHNPTG DPT EQW+QI  +M+ + L PFF
Sbjct:    1 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGLLNDLENAPEFSIVVLHACAHNPTGTDPTPEQWKQIASVMKHRFLFPFF 222          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC_PANTR (Aspartate aminotransferase, cytoplasmic OS=Pan troglodytes GN=GOT1 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.702e-57
Identity = 111/222 (50.00%), Postives = 149/222 (67.12%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            M   SVF ++ +A    +  +T  + +D  P K+NLGVGAYRT++  P VL VV+K EQ + ND S   EYLPI+GL +F   +++L LG DSPA+K+ RV  VQ L GTG+LR+GA+FLAR Y+        +Y+  PTW NH  VF+ AG   +++YRY+D   RGL+ QG L DL  AP  +IV+LHACAHNPTG+DPT EQW+QI  +M+ + L PFF
Sbjct:    1 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFF 222          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC_HUMAN (Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3)

HSP 1 Score: 221.861 bits (564), Expect = 2.702e-57
Identity = 111/222 (50.00%), Postives = 149/222 (67.12%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            M   SVF ++ +A    +  +T  + +D  P K+NLGVGAYRT++  P VL VV+K EQ + ND S   EYLPI+GL +F   +++L LG DSPA+K+ RV  VQ L GTG+LR+GA+FLAR Y+        +Y+  PTW NH  VF+ AG   +++YRY+D   RGL+ QG L DL  AP  +IV+LHACAHNPTG+DPT EQW+QI  +M+ + L PFF
Sbjct:    1 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFF 222          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC_MOUSE (Aspartate aminotransferase, cytoplasmic OS=Mus musculus GN=Got1 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 4.609e-57
Identity = 112/222 (50.45%), Postives = 147/222 (66.22%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            M   SVF ++ +AP   +  +T  +  D  P K+NLGVGAYRT+E +P VL VVRK EQ + ND S   EYLPI+GL +F   +++L+LG +SPAI++NRV  VQ L GTG+LR+GA+FL R Y+        IY+  PTW NH  VF+ AG   ++ Y Y+D   RGL+ QG L DL  AP  +I +LHACAHNPTG DPT EQW+QI  +M+ + L PFF
Sbjct:    1 MAPPSVFAQVPQAPPVLVFKLTADFRDDPDPRKVNLGVGAYRTDESQPWVLPVVRKVEQKIANDNSLNHEYLPILGLAEFRSCASRLVLGDNSPAIRENRVGGVQSLGGTGALRIGADFLGRWYNGTDNKNTPIYVSSPTWENHNAVFSAAGFKDIRPYCYWDAEKRGLDLQGFLNDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIAAVMQRRFLFPFF 222          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC_CHICK (Aspartate aminotransferase, cytoplasmic OS=Gallus gallus GN=GOT1 PE=1 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 6.019e-57
Identity = 111/218 (50.92%), Postives = 147/218 (67.43%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            S+F  + RAP   +  +T  + +D    K+NLGVGAYRT+EG+P VL VVRK EQL+  D S   EYLPI+GL +F   ++++ LG DSPAI   RV +VQ L GTG+LR+GAEFL R Y+        +Y+  PTW NH  VF  AG   ++TYRY+D A RGL+ QGLL+D+  AP  +I +LHACAHNPTG DPT ++W+QI  +M+ + L PFF
Sbjct:    4 SIFAAVPRAPPVAVFKLTADFREDGDSRKVNLGVGAYRTDEGQPWVLPVVRKVEQLIAGDGSLNHEYLPILGLPEFRANASRIALGDDSPAIAQKRVGSVQGLGGTGALRIGAEFLRRWYNGNNNTATPVYVSSPTWENHNSVFMDAGFKDIRTYRYWDAAKRGLDLQGLLDDMEKAPEFSIFILHACAHNPTGTDPTPDEWKQIAAVMKRRCLFPFF 221          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATM_RAT (Aspartate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Got2 PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 7.861e-57
Identity = 108/204 (52.94%), Postives = 142/204 (69.61%), Query Frame = 3
Query:   96 PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL DF K SA+L LG +S  +K  R  TVQ +SGTG+LRVGA FL R +     +++P+P+WGNH  +F  AG+ ++ YRYYDP T G +F G LED+   P  +++LLHACAHNPTGVDP  EQW+++  +++ K L  FF
Sbjct:   40 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAG-KNLDKEYLPIGGLADFCKASAELALGENSEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEMAAVVKKKNLFAFF 242          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATM_HORSE (Aspartate aminotransferase, mitochondrial OS=Equus caballus GN=GOT2 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.861e-57
Identity = 111/213 (52.11%), Postives = 143/213 (67.14%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            S +  +   P DPILGVT AY +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG +S A+K  R  TVQ +SGTG+LR+GA FL R +     +++P+P+WGNH  +F  AGL +  YRYYDP T G +  G LED+   P  +I+LLHACAHNPTGVDP  EQW++I  L++   L  FF
Sbjct:    2 SWWAHVEMGPPDPILGVTEAYKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENSEALKSGRYVTVQSISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGLQLHAYRYYDPKTCGFDVTGALEDISKIPQQSIILLHACAHNPTGVDPRPEQWKEIATLVKKNNLFAFF 213          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC_MACFA (Aspartate aminotransferase, cytoplasmic OS=Macaca fascicularis GN=GOT1 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.861e-57
Identity = 110/222 (49.55%), Postives = 148/222 (66.67%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            M   SVF ++ +A    +  +T  + +D  P K+NLGVGAYRT++  P VL VV+K EQ + ND S   EYLPI+GL +F   +++L LG DSPA+K+ RV  VQ L GTG+LR+GA+FLAR Y+        +Y+  PTW NH  VF+ AG   +++YRY+D   RGL+ QG L DL  AP  +I++LHACAHNPTG DPT EQW+QI  +M+ + L PFF
Sbjct:    1 MAPPSVFSEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIIVLHACAHNPTGTDPTPEQWKQIASVMKHRFLFPFF 222          
The following BLAST results are available for this feature:
BLAST of FC920492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
AATM_CHICK6.431e-5951.63Aspartate aminotransferase, mitochondrial OS=Gallu... [more]
AATC_BOVIN9.286e-5850.00Aspartate aminotransferase, cytoplasmic OS=Bos tau... [more]
AATC_PONAB2.069e-5750.45Aspartate aminotransferase, cytoplasmic OS=Pongo a... [more]
AATC_PANTR2.702e-5750.00Aspartate aminotransferase, cytoplasmic OS=Pan tro... [more]
AATC_HUMAN2.702e-5750.00Aspartate aminotransferase, cytoplasmic OS=Homo sa... [more]
AATC_MOUSE4.609e-5750.45Aspartate aminotransferase, cytoplasmic OS=Mus mus... [more]
AATC_CHICK6.019e-5750.92Aspartate aminotransferase, cytoplasmic OS=Gallus ... [more]
AATM_RAT7.861e-5752.94Aspartate aminotransferase, mitochondrial OS=Rattu... [more]
AATM_HORSE7.861e-5752.11Aspartate aminotransferase, mitochondrial OS=Equus... [more]
AATC_MACFA7.861e-5749.55Aspartate aminotransferase, cytoplasmic OS=Macaca ... [more]

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Properties
Property NameValue
Genbank descriptionC32009B02EF RVDevelop1 Citrus clementina cDNA clone C32009B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920492 ID=FC920492; Name=FC920492; organism=Citrus clementina; type=EST; length=704bp
GATTTTTTTTTCCCCCACAAACTCTCTCTTTTCATTGATTTCTTGAAAGA
AATTTAATGGATTCTGAATCAGTGTTTGGAAAGATTGTTCGTGCTCCTGA
AGATCCCATTCTAGGGGTCACTGTTGCTTATAACAAGGATACAAGCCCAG
TCAAGTTGAACTTGGGTGTTGGTGCTTACCGAACTGAGGAAGGGAAACCT
CTGGTTCTGAATGTAGTGAGAAAGGCAGAGCAGCTCTTAGTGAATGACCA
GTCACGGGTCAAAGAGTATCTTCCCATTGTTGGACTTGTGGATTTTAATA
AATTGAGTGCAAAGCTCATCCTTGGTGCTGACAGCCCTGCGATTAAAGAC
AACAGAGTGACCACCGTTCAGTGCTTGTCTGGCACTGGTTCTTTGAGGGT
TGGAGCTGAGTTTCTGGCAAGGCATTATCACCAACTTACCATATATATTC
CACAGCCAACATGGGGAAACCATCCCAAAGTTTTCACTTTAGCAGGATTG
TCTGTGAAGACCTACCGCTATTATGATCCAGCAACACGTGGGCTAAACTT
CCAAGGCTTGCTGGAGGATCTTAGGGCTGCACCATCCGGAGCTATAGTTC
TTCTTCATGCATGTGCTCATAATCCAACTGGTGTTGACCCGACCCTTGAG
CAGTGGGAGCAGATCAGGCAGCTGATGAGGTCAAAAGGATTGTTACCTTT
CTTT
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