FC920492

Overview
NameFC920492
Unique NameFC920492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15544 contig Ccv1_Contig15544:86..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: TYRB_SALTY (Aromatic-amino-acid aminotransferase OS=Salmonella typhimurium GN=tyrB PE=3 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 2.714e-41
Identity = 83/210 (39.52%), Postives = 121/210 (57.62%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPF 701
            +F K+     DPIL +   +  D+   K+NL +G Y  E+G    L  V +AE  L         YLP+ GL  +    A L+ GAD P ++  RV T+Q L G+G+L+VGA+FL R++    +++  PTW NH  +F  AG  V TY +YD AT G+ F  LL  L   P+ +IVLLH C HNPTG D T  QW+ + ++++++ L+PF
Sbjct:    1 MFQKVDAYAGDPILSLMERFKDDSRHDKVNLSIGLYYNEDGIIPQLKTVAEAEARLNAQPHGASLYLPMEGLNTYRHTIAPLLFGADHPVLQQQRVATIQTLGGSGALKVGADFLKRYFPDAGVWVSDPTWENHIAIFAGAGFEVSTYPWYDDATNGIRFNDLLATLNTLPARSIVLLHPCCHNPTGADLTPSQWDAVIEIVKARDLIPF 210          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC_SCHPO (Aspartate aminotransferase, cytoplasmic OS=Schizosaccharomyces pombe GN=aat2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.630e-41
Identity = 85/217 (39.17%), Postives = 130/217 (59.91%), Query Frame = 3
Query:   63 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLT---IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            S+  F  I  A  D I  +   Y++D  P K+N+ VGAYR + GKP +L  V+KA +++    S   EYLPI GL  F K +A+++   +   + ++RV ++Q +SGTG+  + A F+   Y + T   +YI  PTW  H  ++   G++V TY Y+D   R  +++G+L  +++AP G+I LLHACAHNPTG+DPT EQW  I + + S+  L  F
Sbjct:    2 SDYGFANIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFNHEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHTGAHVYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHACAHNPTGIDPTREQWLSIFESLLSRKHLVVF 218          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: TYRB_KLEPN (Tyrosine aminotransferase OS=Klebsiella pneumoniae GN=tyrB PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.732e-40
Identity = 78/210 (37.14%), Postives = 126/210 (60.00%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPF 701
            +F K+     DPIL +   + +D    K+NL +G Y  ++G    L  V +AE  L  +      YLP+ G   + +  A L+ GA+  A+K NR+ ++Q + G+G+L+VGA+FL R++ +  +++  PTW NH  +F  AG  V TY ++D AT G+ F+ LL  L+  P+  IVLLH C HNPTG D T  QW+++ ++++++ L+PF
Sbjct:    1 MFQKVDAYAGDPILSLMERFKEDPRSDKVNLSIGLYYNDDGIIPQLQAVAEAEARLNAEPHGASLYLPMEGFSGYRQAIAPLLFGAEHTALKQNRIASIQTVGGSGALKVGADFLKRYFPESHVWVSDPTWENHIAIFEGAGFEVSTYPWFDKATNGVRFENLLAMLQTLPARDIVLLHPCCHNPTGADLTPAQWDRVVEVLKARQLIPF 210          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: PHHC_PSEAE (Aromatic-amino-acid aminotransferase OS=Pseudomonas aeruginosa GN=phhC PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.476e-35
Identity = 84/210 (40.00%), Postives = 114/210 (54.29%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLP 698
            S F K+ R P DPILG+  AY  D    KL+LGVG Y+  +G   +L  V+ AEQ LV +Q   K Y+   G   F    A+L LGA SP + + R    Q   GTG+LR+  +F+A       I++  PTW  H  +F  AGL V  Y Y     R L+ + +L  L   P G +VLLHAC HNPTG D + + W ++  ++R + LLP
Sbjct:    2 SHFAKVARVPGDPILGLLDAYRNDPRADKLDLGVGVYKDAQGLTPILRSVKLAEQRLV-EQETTKSYVGGHGDALFAARLAELALGAASPLLLEQRADATQTPGGTGALRLAGDFIAHCLPGRGIWLSDPTWPIHETLFAAAGLKVSHYPYVSADNR-LDVEAMLAGLERIPQGDVVLLHACCHNPTGFDLSHDDWRRVLDVVRRRELLP 209          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: TYRB_PARDE (Aromatic-amino-acid aminotransferase OS=Paracoccus denitrificans GN=tyrB PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.443e-34
Identity = 75/209 (35.89%), Postives = 111/209 (53.11%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLP 698
            + G +     D IL +   +  D    K++LGVG Y+   G   ++  V  AEQ ++  ++  K Y  + G  +F K   +LILG     +K     T+  + GTG+LR   E        L +++  PTW NH  +    GL V+TYRY+D  TRG++F+G+  DL AA  G +VLLH C HNPTG + TL+QW +I  ++   G LP
Sbjct:    1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET-TKTYAGLSGEPEFQKAMGELILG---DGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALP 205          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: ATTY_RHIME (Tyrosine aminotransferase OS=Rhizobium meliloti GN=tatA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.057e-29
Identity = 75/209 (35.89%), Postives = 116/209 (55.50%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLP 698
            +F  + R  +DP+L +   + KD  P K++LGVG YR E G+  +   V+ AE+ L+  Q       P   LV  ++L    ++G D+  I+ + V  VQ   G+G+LR+ A+ +AR   +  I++  P+W NH  +F  AGL + TY ++D  ++ + F  L+  L  A SG  VLLHA  HNPTG   +  QW +I  L+  +GLLP
Sbjct:    1 MFDALARQADDPLLALIGLFRKDERPGKVDLGVGVYRDETGRTPIFRAVKAAEKRLLETQDSKAYIGPEGDLVFLDRLWE--LVGGDT--IERSHVAGVQTPGGSGALRLAADLIARMGGR-GIWLGLPSWPNHAPIFKAAGLDIATYDFFDIPSQSVIFDNLVSALEGAASGDAVLLHASCHNPTGGVLSEAQWMEIAALVAERGLLP 204          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATM_YEAST (Aspartate aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=AAT1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26
Identity = 74/227 (32.60%), Postives = 118/227 (51.98%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN--DQSRVKEYLPIVGLVDFNKLSAKLILGADSPA-----IKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAP---------SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLP 698
            S   ++ RAP D +LG++  + K  +  K++L VG Y+   GK      V KA++L+ +  + ++   YLPI G  +F +   K +     P      +  +R++ VQ LSGTG+L V A+FLA    +  I+IP P+W NH  +F   G  ++  Y YY      ++  G +E L+            +   ++LHAC HNPTG+DPT EQWE+I   +    ++P
Sbjct:   18 SSLSRVPRAPPDKVLGLSEHFKKVKNVNKIDLTVGIYKDGWGKVTTFPSVAKAQKLIESHLELNKNLSYLPITGSKEFQENVMKFLFKESCPQFGPFYLAHDRISFVQTLSGTGALAVAAKFLALFISR-DIWIPDPSWANHKNIFQNNGFENIYRYSYYKDGQ--IDIDGWIEQLKTFAYNNQQENNKNPPCIILHACCHNPTGLDPTKEQWEKIIDTIYELKMVP 241          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC2_BOVIN (Putative aspartate aminotransferase, cytoplasmic 2 OS=Bos taurus GN=GOT1L1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 60/193 (31.09%), Postives = 97/193 (50.26%), Query Frame = 3
Query:  129 YNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTI-YIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            Y +D +P K+ L      T +G+P V +VVRK    +  D S   EY P++G+  F + S  L+ G +S  I +NR   VQ +  +G+ ++GA+FL        I YI       H  +F   G +V  + ++D A   L+   LL+ ++ AP G + ++ +  +       T  QW Q+  LM+SK + PFF
Sbjct:   24 YKQDDNPNKMFLAYKVCMTSKGRPWVSSVVRKTRMQIAQDPSLNYEYTPVMGMKSFVQASLNLLFGKNSQVIVENRAGGVQTVGDSGAFQLGAQFLKSWCQSSQIVYIVSSQKEPHGLIFQDMGFTVYEHTFWDSAHLCLDPNMLLDVVKHAPHGCVFVIGSMGN----CQLTPSQWTQLMTLMKSKEIFPFF 212          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC2_HUMAN (Putative aspartate aminotransferase, cytoplasmic 2 OS=Homo sapiens GN=GOT1L1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 61/196 (31.12%), Postives = 92/196 (46.94%), Query Frame = 3
Query:  129 YNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFL-ARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH---ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            Y +D  P K+ L      T EG P V  VV+K    +  D S   EYLP +GL  F + S  L+ G  S AI +NRV  V  +  +G+ ++G +FL A H     +YI       H  VF   G +V  Y  +DP    ++   LL  +   P G ++++     C   P+G       W ++  +++SK + PFF
Sbjct:   24 YKQDDYPNKIFLAYRVCMTNEGHPWVSLVVQKTRLQISQDPSLNYEYLPTMGLKSFIQASLALLFGKHSQAIVENRVGGVHTVGDSGAFQLGVQFLRAWHKDARIVYIISSQKELHGLVFQDMGFTVYEYSVWDPKKLCMDPDILLNVVEQIPHGCVLVMGNIIDCKLTPSG-------WAKLMSMIKSKQIFPFF 212          
BLAST of FC920492 vs. ExPASy Swiss-Prot
Match: AATC2_MOUSE (Putative aspartate aminotransferase, cytoplasmic 2 OS=Mus musculus GN=Got1l1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 68/219 (31.05%), Postives = 102/219 (46.58%), Query Frame = 3
Query:   57 MDSESVFGKIVRAP--EDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIY-IPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 704
            M S SVF  +  A   E  +L +   Y +D  P KL L      TEEG P V  VV K    +  D S   EYLP+VGL  F + S +L+ G  S AI + RV  V  +  +G+ ++GA+FL      + I  I          +F   G  V  Y  ++ +    +    +E L+  P G+I+++     N T    T  QW ++  +++SK + PFF
Sbjct:    1 MTSLSVFRDVPTAQKLEGSLLKI---YRQDGYPSKLFLAYKVCMTEEGHPWVSLVVHKTRLQIAEDPSLDYEYLPLVGLKSFIQSSLELLFGKHSEAIAEKRVGGVHIVGESGAFQLGAQFLKTWRKNVKIVCIVSCQKEQCGLIFQDMGFIVYEYSIWNASDLCSDPSMFVEVLQHIPVGSILVI----GNITDCKFTQNQWTKLMSIIKSKQIFPFF 212          
The following BLAST results are available for this feature:
BLAST of FC920492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
TYRB_SALTY2.714e-4139.52Aromatic-amino-acid aminotransferase OS=Salmonella... [more]
AATC_SCHPO4.630e-4139.17Aspartate aminotransferase, cytoplasmic OS=Schizos... [more]
TYRB_KLEPN8.732e-4037.14Tyrosine aminotransferase OS=Klebsiella pneumoniae... [more]
PHHC_PSEAE6.476e-3540.00Aromatic-amino-acid aminotransferase OS=Pseudomona... [more]
TYRB_PARDE1.443e-3435.89Aromatic-amino-acid aminotransferase OS=Paracoccus... [more]
ATTY_RHIME9.057e-2935.89Tyrosine aminotransferase OS=Rhizobium meliloti GN... [more]
AATM_YEAST5.495e-2632.60Aspartate aminotransferase, mitochondrial OS=Sacch... [more]
AATC2_BOVIN2.920e-1931.09Putative aspartate aminotransferase, cytoplasmic 2... [more]
AATC2_HUMAN1.357e-1631.12Putative aspartate aminotransferase, cytoplasmic 2... [more]
AATC2_MOUSE1.270e-1431.05Putative aspartate aminotransferase, cytoplasmic 2... [more]

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Properties
Property NameValue
Genbank descriptionC32009B02EF RVDevelop1 Citrus clementina cDNA clone C32009B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920492 ID=FC920492; Name=FC920492; organism=Citrus clementina; type=EST; length=704bp
GATTTTTTTTTCCCCCACAAACTCTCTCTTTTCATTGATTTCTTGAAAGA
AATTTAATGGATTCTGAATCAGTGTTTGGAAAGATTGTTCGTGCTCCTGA
AGATCCCATTCTAGGGGTCACTGTTGCTTATAACAAGGATACAAGCCCAG
TCAAGTTGAACTTGGGTGTTGGTGCTTACCGAACTGAGGAAGGGAAACCT
CTGGTTCTGAATGTAGTGAGAAAGGCAGAGCAGCTCTTAGTGAATGACCA
GTCACGGGTCAAAGAGTATCTTCCCATTGTTGGACTTGTGGATTTTAATA
AATTGAGTGCAAAGCTCATCCTTGGTGCTGACAGCCCTGCGATTAAAGAC
AACAGAGTGACCACCGTTCAGTGCTTGTCTGGCACTGGTTCTTTGAGGGT
TGGAGCTGAGTTTCTGGCAAGGCATTATCACCAACTTACCATATATATTC
CACAGCCAACATGGGGAAACCATCCCAAAGTTTTCACTTTAGCAGGATTG
TCTGTGAAGACCTACCGCTATTATGATCCAGCAACACGTGGGCTAAACTT
CCAAGGCTTGCTGGAGGATCTTAGGGCTGCACCATCCGGAGCTATAGTTC
TTCTTCATGCATGTGCTCATAATCCAACTGGTGTTGACCCGACCCTTGAG
CAGTGGGAGCAGATCAGGCAGCTGATGAGGTCAAAAGGATTGTTACCTTT
CTTT
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