FC920497

Overview
NameFC920497
Unique NameFC920497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5819 contig Ccv1_Contig5819:118..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_BACSU (Acetolactate synthase large subunit OS=Bacillus subtilis GN=ilvB PE=1 SV=4)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 43/161 (26.71%), Postives = 78/161 (48.45%), Query Frame = 3
Query:   69 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 551
            + G  +  +SL       +FG  G  V  + +     G+  I   +EQ           ++GKPG+++  SGPG  + + GL++ MI++ P+V+ +G       G   FQE D +    P +K + + +   ++P+ + +    A +GRPG   +D+P DV
Sbjct:   18 MSGALMLIESLKKEKVEMIFGYPGGAVLPIYDKLYNSGLVHILPRHEQGAIHAAEGYARVSGKPGVVIATSGPGATNLVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADILGITMPVTKHSYQVRQPEDLPRIIKEAFHIATTGRPGPVLIDIPKDV 178          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVBL_DANRE (Acetolactate synthase-like protein OS=Danio rerio GN=ilvbl PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 42/161 (26.09%), Postives = 74/161 (45.96%), Query Frame = 3
Query:   75 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 557
            G    A+ L   G   +F +VG  ++ +     +LG+R +   +E            L+G  G+    +GPG  + +  + N  +   P+++I G+      GRG  Q++DQ+   KP  KF    + + E+   V + L  A SG PG  +++ P D L+
Sbjct:   43 GGESVAEVLRSHGVKFVFTLVGGHISPILVACEKLGIRIVDTRHEATAVFAADAVARLSGTVGVAAVTAGPGLTNTVTAVKNAQMAESPLLLIGGAAATLLQGRGALQDIDQMSLFKPLCKFCASVRTVREIVPTVRKALAIAQSGTPGPVFIEFPIDTLY 203          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_KLETE (Acetolactate synthase, catabolic OS=Klebsiella terrigena GN=budB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 41/160 (25.62%), Postives = 71/160 (44.38%), Query Frame = 3
Query:   75 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 554
            G  L    L   G   +FG+ G  +  + +  +   +R I   +E            +TGK G+ L  SGPGC + + G++       P+V + G+  + D  +   Q +D V    P +K+AV+      + + V+     A  GRPG  ++ LP D++
Sbjct:   13 GADLIVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKLVHQSMDTVAMFSPVTKYAVEVTASDALAEVVSNAFRAAEQGRPGSAFVSLPQDIV 172          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB3_BRANA (Acetolactate synthase 3, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 39/126 (30.95%), Postives = 66/126 (52.38%), Query Frame = 3
Query:  183 VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQ 560
            +R +   +EQ            +GKPGI +  SGPG  + ++GL++ M+++ P+V I+G   ++  G   FQE   VE  +  +K      D+ ++P+ V +    A SGRPG   +D+P D+  Q
Sbjct:  118 IRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADAMLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVDDIPRIVQEAFFLATSGRPGPVLVDVPKDIQQQ 243          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB1_BRANA (Acetolactate synthase 1, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 39/126 (30.95%), Postives = 66/126 (52.38%), Query Frame = 3
Query:  183 VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQ 560
            +R +   +EQ            +GKPGI +  SGPG  + ++GL++ M+++ P+V I+G   ++  G   FQE   VE  +  +K      D+ ++P+ V +    A SGRPG   +D+P D+  Q
Sbjct:  121 IRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADAMLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVDDIPRIVQEAFFLATSGRPGPVLVDVPKDIQQQ 246          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVG_ECOLI (Acetolactate synthase isozyme 2 large subunit OS=Escherichia coli (strain K12) GN=ilvG PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 42/161 (26.09%), Postives = 77/161 (47.83%), Query Frame = 3
Query:   69 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 551
            ++G      +L   G   +FG  G  +  + +     GV  +   +EQ            TGK G+ +  SGPG  + + GL++ ++++ P+V I+G       G   FQE+D +      +K +   + + E+P+ +A+  + A SGRPG   +D+P D+
Sbjct:    1 MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARATGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAPFIGTDAFQEVDVLGLSLACTKHSFLVQSLEELPRIMAEAFDVACSGRPGPVLVDIPKDI 161          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_YEAST (Acetolactate synthase catalytic subunit, mitochondrial OS=Saccharomyces cerevisiae GN=ILV2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 48/172 (27.91%), Postives = 78/172 (45.35%), Query Frame = 3
Query:  189 FIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI--SVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLI 698
            F+   +EQ            +GKPG++L  SGPG  + +  +++   +  P+V+ +G       G   FQE D V   +  +K+ V  K + E+P  + +  E A SGRPG   +DLP DV    +   +             + +  Q   V   I+KA  L+  AKKP++
Sbjct:  133 FVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVL 304          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_METJA (Probable acetolactate synthase large subunit OS=Methanocaldococcus jannaschii GN=ilvB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 50/203 (24.63%), Postives = 89/203 (43.84%), Query Frame = 3
Query:   93 KSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIV 701
            K+L   G   +FG  G  +    +      +  I   +EQ            +G+ G+ ++ SGPG  + + G++    ++ P++ ++G    K  G   FQE+D +    P +K   + K   E+P+      E A +GRPG  ++DLP DV    I +              +  T G  +   I KA  L+ E+++P+I+
Sbjct:    9 KALEAEGVKIIFGYPGGAMLPFYDALYDSDLVHILTRHEQAAAHAADGFARASGEAGVCVSTSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGLFMPITKHNFQIKKPEEIPETFRAAFEIATTGRPGPVHIDLPKDVQDGEIDIEKYPIPAKVDLPGYKPKTVGHPL--QIKKAAKLIAESERPVIL 209          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB2_TOBAC (Acetolactate synthase 2, chloroplastic OS=Nicotiana tabacum GN=ALS SURB PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 44/165 (26.67%), Postives = 79/165 (47.88%), Query Frame = 3
Query:   75 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGV-RFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 566
            G+ +  ++L   G T +F   G     +     +  + R +   +EQ            TG PG+ +  SGPG  + ++GL++ ++++ PIV I+G   ++  G   FQE   VE  +  +K      D+ ++P+ V +    A SGRPG   +D+P D+  Q +
Sbjct:   93 GSDVLVEALEREGVTDVFAYPGGASMEIHQALTRSSIIRNVLPRHEQGGVFAAEGYARATGFPGVCIATSGPGATNLVSGLADALLDSVPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVVREAFFLARSGRPGPVLIDVPKDIQQQLV 257          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB1_TOBAC (Acetolactate synthase 1, chloroplastic OS=Nicotiana tabacum GN=ALS SURA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 44/165 (26.67%), Postives = 79/165 (47.88%), Query Frame = 3
Query:   75 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGV-RFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 566
            G+ +  ++L   G T +F   G     +     +  + R +   +EQ            TG PG+ +  SGPG  + ++GL++ ++++ PIV I+G   ++  G   FQE   VE  +  +K      D+ ++P+ V +    A SGRPG   +D+P D+  Q +
Sbjct:   96 GSDVLVEALEREGVTDVFAYPGGASMEIHQALTRSSIIRNVLPRHEQGGVFAAEGYARATGFPGVCIATSGPGATNLVSGLADALLDSVPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVVREAFFLARSGRPGPILIDVPKDIQQQLV 260          
The following BLAST results are available for this feature:
BLAST of FC920497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ILVB_BACSU4.785e-1426.71Acetolactate synthase large subunit OS=Bacillus su... [more]
ILVBL_DANRE6.249e-1426.09Acetolactate synthase-like protein OS=Danio rerio ... [more]
ILVB_KLETE8.162e-1425.63Acetolactate synthase, catabolic OS=Klebsiella ter... [more]
ILVB3_BRANA8.162e-1430.95Acetolactate synthase 3, chloroplastic OS=Brassica... [more]
ILVB1_BRANA8.162e-1430.95Acetolactate synthase 1, chloroplastic OS=Brassica... [more]
ILVG_ECOLI1.066e-1326.09Acetolactate synthase isozyme 2 large subunit OS=E... [more]
ILVB_YEAST1.066e-1327.91Acetolactate synthase catalytic subunit, mitochond... [more]
ILVB_METJA1.066e-1324.63Probable acetolactate synthase large subunit OS=Me... [more]
ILVB2_TOBAC1.066e-1326.67Acetolactate synthase 2, chloroplastic OS=Nicotian... [more]
ILVB1_TOBAC1.066e-1326.67Acetolactate synthase 1, chloroplastic OS=Nicotian... [more]

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Properties
Property NameValue
Genbank descriptionC32009B11EF RVDevelop1 Citrus clementina cDNA clone C32009B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920497 ID=FC920497; Name=FC920497; organism=Citrus clementina; type=EST; length=702bp
GAATATCAAATTTGCTTCCTCCAATGCTTCATCCATCATCTCCATTGCAA
AATTCCCAAAATGCCCAGATCGACGGCAACACCCTGGCGGCCAAATCCTT
GTCACTATTCGGTGCCACCCACATGTTCGGCGTGGTGGGCATTCCCGTTA
CTTCCTTAGCGAACCTGGCCGTCCAGCTCGGCGTCCGGTTCATCGCCTTC
CACAATGAGCAGTCCGCTGGCTACGCCGCCTCAGCCTACGGATACCTGAC
TGGAAAACCCGGCATTCTGTTAACTGTTTCCGGTCCGGGTTGCGTGCACG
GTCTGGCTGGTCTCTCGAATGGGATGATTAACACCTGGCCAATCGTCATG
ATATCCGGCTCCTGCGATCAGAAAGATTTTGGCCGCGGCGATTTTCAAGA
ACTCGACCAAGTGGAAGCCGTCAAGCCTTTTTCGAAATTTGCTGTAAAAG
CGAAGGACATTACGGAAGTTCCCAAGTGTGTCGCTCAGGTTCTTGAACGG
GCTGTTTCGGGGCGGCCCGGCGGGTGTTATTTGGATCTACCCACTGATGT
TTTACATCAAACGATATCGGTATCTGAAGCGGAGAAGCTTCTGAAGGAAG
CGGAGAGTGCCATAGAAACGGTGACGCAAGGGGGGATTGTGAATTCTGAT
ATCGATAAAGCGGTGTCTTTGCTTAAAGAAGCAAAGAAGCCGTTGATTGT
GT
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