FC920497

Overview
NameFC920497
Unique NameFC920497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5819 contig Ccv1_Contig5819:118..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVI_HAEIN (Acetolactate synthase large subunit OS=Haemophilus influenzae GN=ilvI PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 55/212 (25.94%), Postives = 88/212 (41.51%), Query Frame = 3
Query:   66 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLG-VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLI 698
            ++ G  +  +SL   G  ++FG  G  V  + +    LG +  I   +EQ            TGK G +L  SGPG  + + G+     ++ P+V+ISG       G   FQE D +   +P  K +   K   ++P  + +    A +GRPG   +D+P D ++                    TV         I KA+  L  AKKP++
Sbjct:    3 KLSGAEMVVQSLRDEGVEYVFGYPGGAVLDIYDAIHTLGGIEHILVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGILTAYTDSVPMVIISGQVMSNLIGSDAFQECDMLGISRPVVKHSFIVKKAEDIPSTLKKAFYIASTGRPGPVVVDIPKDTVNPNFKYPYEYPEYVELRSYNPTVNGH---KGQIKKALKALLVAKKPIL 211          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_ARATH (Acetolactate synthase, chloroplastic OS=Arabidopsis thaliana GN=CSR 1.2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 44/172 (25.58%), Postives = 83/172 (48.26%), Query Frame = 3
Query:  183 VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLI 698
            +R +   +EQ            +GKPGI +  SGPG  + ++GL++ ++++ P+V I+G   ++  G   FQE   VE  +  +K      D+ ++P+ + +    A SGRPG   +D+P D+  Q   +               +       +S +++ V L+ E+KKP++
Sbjct:  136 IRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQ---LAIPNWEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVL 304          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVG_MYCTU (Probable acetolactate synthase OS=Mycobacterium tuberculosis GN=ilvG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 54/206 (26.21%), Postives = 89/206 (43.20%), Query Frame = 3
Query:   84 LAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIV 701
            L A+ L   G   +F + G  + S+ +   + G+R I   +EQ           +T  PG+    +GPG  +G++ ++    N  P+V++ G      +G G  QE+D V  V P ++FA  A+        V Q L+ AVS   G  ++D P D      S+                 T  G     +D+A  LL  A++P+I+
Sbjct:   16 LIARRLKASGIDTVFTLSGGHLFSIYDGCREEGIRLIDTRHEQTAAFAAEGWSKVTRVPGVAALTAGPGITNGMSAMAAAQQNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVARFAATAQSAENAGLLVDQALQAAVSAPSGVAFVDFPMD---HAFSMSSDNGRPGALTELPAGPTPAG---DALDRAAGLLSTAQRPVIM 215          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVG_MYCBO (Probable acetolactate synthase OS=Mycobacterium bovis GN=ilvG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 54/206 (26.21%), Postives = 89/206 (43.20%), Query Frame = 3
Query:   84 LAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIV 701
            L A+ L   G   +F + G  + S+ +   + G+R I   +EQ           +T  PG+    +GPG  +G++ ++    N  P+V++ G      +G G  QE+D V  V P ++FA  A+        V Q L+ AVS   G  ++D P D      S+                 T  G     +D+A  LL  A++P+I+
Sbjct:   16 LIARRLKASGIDTVFTLSGGHLFSIYDGCREEGIRLIDTRHEQTAAFAAEGWSKVTRVPGVAALTAGPGITNGMSAMAAAQQNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVARFAATAQSAENAGLLVDQALQAAVSAPSGVAFVDFPMD---HAFSMSSDNGRPGALTELPAGPTPAG---DALDRAAGLLSTAQRPVIM 215          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_CORGL (Acetolactate synthase large subunit OS=Corynebacterium glutamicum GN=ilvB PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 52/212 (24.53%), Postives = 94/212 (44.34%), Query Frame = 3
Query:   66 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLAN-LAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLI 698
            ++ G     +SL    A  +FG+ G  V  + + L     VR +   +EQ           +TG+ G+ +  SGPG  + +  +++  +++ P+V I+G       G   FQE D      P +K      +  ++P+ +A+    A++GRPG   +D+P DV +  +               + T          I++AV L+ EAKKP++
Sbjct:   25 RMTGAKAIVRSLEELNADIVFGIPGGAVLPVYDPLYSSTKVRHVLVRHEQGAGHAATGYAQVTGRVGVCIATSGPGATNLVTPIADANLDSVPMVAITGQVGSGLLGTDAFQEADIRGITMPVTKHNFMVTNPNDIPQALAEAFHLAITGRPGPVLVDIPKDVQNAELDFVWPPKIDLPGYRPVSTPHA-----RQIEQAVKLIGEAKKPVL 231          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVBL_BOVIN (Acetolactate synthase-like protein OS=Bos taurus GN=ILVBL PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 41/161 (25.47%), Postives = 72/161 (44.72%), Query Frame = 3
Query:   75 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 557
            G    A  L   G   +F +VG  ++ L     +LG+R +   +E            LTG  G+    +GPG  + +  + N  I   P++++ G+       RG  Q +DQ+   +P  KF    + + ++   +   +  A SG PG  +++LP DVL+
Sbjct:   54 GGENVAAVLKAHGVRFLFTLVGGHISPLLVACEKLGIRVVDTRHEVTAVFAADAVARLTGTVGVAAVTAGPGLTNTVTAVKNAQIAQSPVLLLGGAASTLLQNRGALQAIDQIALFRPLCKFCASVRRVRDIIPTLRAAMAAAQSGTPGPVFVELPLDVLY 214          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_MYCTU (Acetolactate synthase OS=Mycobacterium tuberculosis GN=ilvB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 45/164 (27.44%), Postives = 77/164 (46.95%), Query Frame = 3
Query:   66 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLAN-LAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 554
            Q+ G     +SL   G   +FG+ G  V  + + L     +R +   +EQ           +TG+ G+ +  SGPG  + +  L++  +++ P+V I+G   +   G   FQE D      P +K     +   ++P+ +A+    A SGRPG   +D+P DVL
Sbjct:   37 QLTGAQAVIRSLEELGVDVIFGIPGGAVLPVYDPLFDSKKLRHVLVRHEQGAGHAASGYAHVTGRVGVCMATSGPGATNLVTPLADAQMDSIPVVAITGQVGRGLIGTDAFQEADISGITMPITKHNFLVRSGDDIPRVLAEAFHIAASGRPGAVLVDIPKDVL 200          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_MYCBO (Acetolactate synthase OS=Mycobacterium bovis GN=ilvB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 45/164 (27.44%), Postives = 77/164 (46.95%), Query Frame = 3
Query:   66 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLAN-LAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 554
            Q+ G     +SL   G   +FG+ G  V  + + L     +R +   +EQ           +TG+ G+ +  SGPG  + +  L++  +++ P+V I+G   +   G   FQE D      P +K     +   ++P+ +A+    A SGRPG   +D+P DVL
Sbjct:   37 QLTGAQAVIRSLEELGVDVIFGIPGGAVLPVYDPLFDSKKLRHVLVRHEQGAGHAASGYAHVTGRVGVCMATSGPGATNLVTPLADAQMDSIPVVAITGQVGRGLIGTDAFQEADISGITMPITKHNFLVRSGDDIPRVLAEAFHIAASGRPGAVLVDIPKDVL 200          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVBL_MOUSE (Acetolactate synthase-like protein OS=Mus musculus GN=Ilvbl PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 40/161 (24.84%), Postives = 72/161 (44.72%), Query Frame = 3
Query:   75 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 557
            G    A  L   G   +F +VG  ++ L     +LG+R +   +E            LTG  G+    +GPG  + +  + N  +   P++++ G+       RG  Q +DQ+   +P  KF    + + ++   +   +  A SG PG  +++LP DVL+
Sbjct:   54 GGESVAAVLRAHGVRFVFTLVGGHISPLLVACEKLGIRVVDTRHEVTAVFAADAVARLTGTVGVAAVTAGPGLTNTVTAVKNAQVAQSPVLLLGGAASTLLQKRGALQAIDQMSLFRPLCKFCASVRRVRDIVPTLRTAIAAAQSGTPGPVFVELPLDVLY 214          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVBL_HUMAN (Acetolactate synthase-like protein OS=Homo sapiens GN=ILVBL PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 41/161 (25.47%), Postives = 73/161 (45.34%), Query Frame = 3
Query:   75 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 557
            G    A  L   G   +F +VG  ++ L     +LG+R +   +E            L+G  G+    +GPG  + +  + N  +   PI+++ G+       RG  Q +DQ+   +P  KF V  + + ++   +   +  A SG PG  +++LP DVL+
Sbjct:   54 GGENVAAVLRAHGVRFIFTLVGGHISPLLVACEKLGIRVVDTRHEVTAVFAADAMARLSGTVGVAAVTAGPGLTNTVTAVKNAQMAQSPILLLGGAASTLLQNRGALQAVDQLSLFRPLCKFCVSVRRVRDIVPTLRAAMAAAQSGTPGPVFVELPVDVLY 214          
The following BLAST results are available for this feature:
BLAST of FC920497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ILVI_HAEIN1.392e-1325.94Acetolactate synthase large subunit OS=Haemophilus... [more]
ILVB_ARATH1.818e-1325.58Acetolactate synthase, chloroplastic OS=Arabidopsi... [more]
ILVG_MYCTU2.375e-1326.21Probable acetolactate synthase OS=Mycobacterium tu... [more]
ILVG_MYCBO2.375e-1326.21Probable acetolactate synthase OS=Mycobacterium bo... [more]
ILVB_CORGL2.375e-1324.53Acetolactate synthase large subunit OS=Corynebacte... [more]
ILVBL_BOVIN3.102e-1325.47Acetolactate synthase-like protein OS=Bos taurus G... [more]
ILVB_MYCTU9.024e-1327.44Acetolactate synthase OS=Mycobacterium tuberculosi... [more]
ILVB_MYCBO9.024e-1327.44Acetolactate synthase OS=Mycobacterium bovis GN=il... [more]
ILVBL_MOUSE9.024e-1324.84Acetolactate synthase-like protein OS=Mus musculus... [more]
ILVBL_HUMAN9.024e-1325.47Acetolactate synthase-like protein OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC32009B11EF RVDevelop1 Citrus clementina cDNA clone C32009B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920497 ID=FC920497; Name=FC920497; organism=Citrus clementina; type=EST; length=702bp
GAATATCAAATTTGCTTCCTCCAATGCTTCATCCATCATCTCCATTGCAA
AATTCCCAAAATGCCCAGATCGACGGCAACACCCTGGCGGCCAAATCCTT
GTCACTATTCGGTGCCACCCACATGTTCGGCGTGGTGGGCATTCCCGTTA
CTTCCTTAGCGAACCTGGCCGTCCAGCTCGGCGTCCGGTTCATCGCCTTC
CACAATGAGCAGTCCGCTGGCTACGCCGCCTCAGCCTACGGATACCTGAC
TGGAAAACCCGGCATTCTGTTAACTGTTTCCGGTCCGGGTTGCGTGCACG
GTCTGGCTGGTCTCTCGAATGGGATGATTAACACCTGGCCAATCGTCATG
ATATCCGGCTCCTGCGATCAGAAAGATTTTGGCCGCGGCGATTTTCAAGA
ACTCGACCAAGTGGAAGCCGTCAAGCCTTTTTCGAAATTTGCTGTAAAAG
CGAAGGACATTACGGAAGTTCCCAAGTGTGTCGCTCAGGTTCTTGAACGG
GCTGTTTCGGGGCGGCCCGGCGGGTGTTATTTGGATCTACCCACTGATGT
TTTACATCAAACGATATCGGTATCTGAAGCGGAGAAGCTTCTGAAGGAAG
CGGAGAGTGCCATAGAAACGGTGACGCAAGGGGGGATTGTGAATTCTGAT
ATCGATAAAGCGGTGTCTTTGCTTAAAGAAGCAAAGAAGCCGTTGATTGT
GT
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