FC920497

Overview
NameFC920497
Unique NameFC920497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5819 contig Ccv1_Contig5819:118..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_ECOLI (Acetolactate synthase isozyme 1 large subunit OS=Escherichia coli (strain K12) GN=ilvB PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 46/193 (23.83%), Postives = 80/193 (41.45%), Query Frame = 3
Query:  132 VVGIPVTSLAN----LAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLI 698
            V GIP  S+      L+    +R I   +EQ             GKP + +  SGPG  + +  +++  +++ P++ I+G       G   FQE+D      P +K     + I E+P+ ++     A SGRPG  ++D+P DV      +              E           I  A +++  AK+P++
Sbjct:   31 VTGIPGGSILPVYDALSQSTQIRHILARHEQGAGFIAQGMARTDGKPAVCMACSGPGATNLVTAIADARLDSIPLICITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRHIEELPQVMSDAFRIAQSGRPGPVWIDIPKDVQTAVFEI-------ETQPAMAEKAAAPAFSEESIRDAAAMINAAKRPVL 216          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB2_MAIZE (Acetolactate synthase 2, chloroplastic OS=Zea mays GN=ALS2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 34/121 (28.10%), Postives = 62/121 (51.24%), Query Frame = 3
Query:  198 FHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQ 560
            F +EQ            +G+ G+ +  SGPG  + ++ L++ ++++ P+V I+G   ++  G   FQE   VE  +  +K      D+ ++P+ V +    A SGRPG   +D+P D+  Q
Sbjct:  109 FRHEQGEAFAASAYARSSGRVGVCIATSGPGATNLVSALADALLDSVPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRVVQEAFFLASSGRPGPVLVDIPKDIQQQ 229          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB1_MAIZE (Acetolactate synthase 1, chloroplastic OS=Zea mays GN=ALS1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 34/121 (28.10%), Postives = 62/121 (51.24%), Query Frame = 3
Query:  198 FHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQ 560
            F +EQ            +G+ G+ +  SGPG  + ++ L++ ++++ P+V I+G   ++  G   FQE   VE  +  +K      D+ ++P+ V +    A SGRPG   +D+P D+  Q
Sbjct:  109 FRHEQGEAFAASGYARSSGRVGVCIATSGPGATNLVSALADALLDSVPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRVVQEAFFLASSGRPGPVLVDIPKDIQQQ 229          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB1_ORYSJ (Acetolactate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 33/121 (27.27%), Postives = 62/121 (51.24%), Query Frame = 3
Query:  198 FHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQ 560
            F +EQ            +G+ G+ +  SGPG  + ++ L++ ++++ P+V I+G   ++  G   FQE   VE  +  +K      D+ ++P+ + +    A SGRPG   +D+P D+  Q
Sbjct:  115 FRHEQGEAFAASGYARASGRVGVCVATSGPGATNLVSALADALLDSVPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRVIQEAFFLASSGRPGPVLVDIPKDIQQQ 235          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVB_MYCAV (Acetolactate synthase OS=Mycobacterium avium GN=ilvB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 46/167 (27.54%), Postives = 76/167 (45.51%), Query Frame = 3
Query:   66 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLAN-LAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSK---FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 554
            Q+ G     +SL   G   +FG+ G  V  + + L     +R +   +EQ            TGK G+ +  SGPG  + +  L++  +++ P+V ++G   +   G   FQE D      P +K     V+ ++    P  +A+    A SGRP  C +D+P DVL
Sbjct:   41 QVTGAQSVIRSLEELGVEVIFGIPGGAVLPVYDPLFDSKKLRHVLVRHEQGAGHAASGYAHATGKVGVCMATSGPGATNLVTALADAQMDSIPVVAVTGQVGRTLIGTDAFQEADISGITMPITKHNFLVVRQRN----PAVLAEAFHIAASGRPARCSVDIPKDVL 203          
BLAST of FC920497 vs. ExPASy Swiss-Prot
Match: ILVBL_XENLA (Acetolactate synthase-like protein OS=Xenopus laevis GN=ilvbl PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 39/167 (23.35%), Postives = 75/167 (44.91%), Query Frame = 3
Query:   57 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 557
            QN++  G  L A  L       +F + G  ++ +   A +  +R I   +E            L+G  G+    +GPG  + +  + N  +   PIV+++G+      GRG  Q++DQ+   +P  K++ +   + ++   + +    A SG PG   ++ P D L+
Sbjct:   34 QNSKHFGGELVADVLKAHDVRFLFTLCGGHISPILVAAERQNIRVIDVRHEASAVFAADAVSRLSGTVGVAAVTAGPGLTNTVTAVKNAQMAESPIVLLAGAAAGLLRGRGSLQDIDQLSLFRPLCKWSGRVNCVKDIVPMLCKAFYLARSGTPGPVLVEFPIDTLY 200          
The following BLAST results are available for this feature:
BLAST of FC920497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ILVB_ECOLI2.903e-1123.83Acetolactate synthase isozyme 1 large subunit OS=E... [more]
ILVB2_MAIZE2.903e-1128.10Acetolactate synthase 2, chloroplastic OS=Zea mays... [more]
ILVB1_MAIZE2.903e-1128.10Acetolactate synthase 1, chloroplastic OS=Zea mays... [more]
ILVB1_ORYSJ3.791e-1127.27Acetolactate synthase 1, chloroplastic OS=Oryza sa... [more]
ILVB_MYCAV6.467e-1127.54Acetolactate synthase OS=Mycobacterium avium GN=il... [more]
ILVBL_XENLA8.446e-1123.35Acetolactate synthase-like protein OS=Xenopus laev... [more]

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Properties
Property NameValue
Genbank descriptionC32009B11EF RVDevelop1 Citrus clementina cDNA clone C32009B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920497 ID=FC920497; Name=FC920497; organism=Citrus clementina; type=EST; length=702bp
GAATATCAAATTTGCTTCCTCCAATGCTTCATCCATCATCTCCATTGCAA
AATTCCCAAAATGCCCAGATCGACGGCAACACCCTGGCGGCCAAATCCTT
GTCACTATTCGGTGCCACCCACATGTTCGGCGTGGTGGGCATTCCCGTTA
CTTCCTTAGCGAACCTGGCCGTCCAGCTCGGCGTCCGGTTCATCGCCTTC
CACAATGAGCAGTCCGCTGGCTACGCCGCCTCAGCCTACGGATACCTGAC
TGGAAAACCCGGCATTCTGTTAACTGTTTCCGGTCCGGGTTGCGTGCACG
GTCTGGCTGGTCTCTCGAATGGGATGATTAACACCTGGCCAATCGTCATG
ATATCCGGCTCCTGCGATCAGAAAGATTTTGGCCGCGGCGATTTTCAAGA
ACTCGACCAAGTGGAAGCCGTCAAGCCTTTTTCGAAATTTGCTGTAAAAG
CGAAGGACATTACGGAAGTTCCCAAGTGTGTCGCTCAGGTTCTTGAACGG
GCTGTTTCGGGGCGGCCCGGCGGGTGTTATTTGGATCTACCCACTGATGT
TTTACATCAAACGATATCGGTATCTGAAGCGGAGAAGCTTCTGAAGGAAG
CGGAGAGTGCCATAGAAACGGTGACGCAAGGGGGGATTGTGAATTCTGAT
ATCGATAAAGCGGTGTCTTTGCTTAAAGAAGCAAAGAAGCCGTTGATTGT
GT
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