FC920667

Overview
NameFC920667
Unique NameFC920667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14176 contig Ccv1_Contig14176:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920667 vs. ExPASy Swiss-Prot
Match: HOX9_ORYSI (Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. indica GN=HOX9 PE=2 SV=2)

HSP 1 Score: 339.347 bits (869), Expect = 1.152e-92
Identity = 170/232 (73.28%), Postives = 191/232 (82.33%), Query Frame = 2
Query:    2 RVYSECPQPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAPATTTDNSCESVVMSGXXXXXXXXXXXXXXRDASNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQ 697
            RVY+ECP+PSS RRQQL+R+CPIL+NIEPKQIKVWFQNRRCR+KQRKEASRLQ VNRKL+AMNKLLMEEN+RLQKQVS LV+EN YM+QQL + P+   D SCES V +               RDASNP+GLL +AEETL EFLSKATGTAVDWV M GMKPGPDS GIVAVS  C GVAARACGLV+L+PTKI EILKD PSWFRDCR L+V ++ P GNGGTIEL+YMQ
Sbjct:   43 RVYAECPKPSSSRRQQLLRDCPILANIEPKQIKVWFQNRRCRDKQRKEASRLQAVNRKLTAMNKLLMEENERLQKQVSQLVHENAYMKQQLQN-PSLGNDTSCESNVTT----------PQNPLRDASNPSGLLTIAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYMQ 263          
BLAST of FC920667 vs. ExPASy Swiss-Prot
Match: HOX10_ORYSJ (Homeobox-leucine zipper protein HOX10 OS=Oryza sativa subsp. japonica GN=HOX10 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.376e-92
Identity = 165/232 (71.12%), Postives = 193/232 (83.19%), Query Frame = 2
Query:    2 RVYSECPQPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAPATTTDNSCESVVMSGXXXXXXXXXXXXXXRDASNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQ 697
            RVY++CP+P+S RRQQL+RECPIL+NIEPKQIKVWFQNRRCR+KQRKE+SRLQ VNRKL+AMNKLLMEEN+RLQKQVS LV+EN +MRQQL + P    D SCES V +               RDASNP+GLL++AEETL EFLSKATGTA+DWVQM GMKPGPDS+GIVA+S  C GVAARACGLV+L+PTK+ EILKD PSWFRDCR L+V ++IP GNGGT+EL+Y Q
Sbjct:   41 RVYADCPKPTSSRRQQLLRECPILANIEPKQIKVWFQNRRCRDKQRKESSRLQAVNRKLTAMNKLLMEENERLQKQVSQLVHENAHMRQQLQNTPLAN-DTSCESNVTT----------PQNPLRDASNPSGLLSIAEETLTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRPSWFRDCRNLEVFTMIPAGNGGTVELVYTQ 261          
BLAST of FC920667 vs. ExPASy Swiss-Prot
Match: HOX10_ORYSI (Homeobox-leucine zipper protein HOX10 OS=Oryza sativa subsp. indica GN=HOX10 PE=2 SV=2)

HSP 1 Score: 337.421 bits (864), Expect = 4.376e-92
Identity = 165/232 (71.12%), Postives = 193/232 (83.19%), Query Frame = 2
Query:    2 RVYSECPQPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAPATTTDNSCESVVMSGXXXXXXXXXXXXXXRDASNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQ 697
            RVY++CP+P+S RRQQL+RECPIL+NIEPKQIKVWFQNRRCR+KQRKE+SRLQ VNRKL+AMNKLLMEEN+RLQKQVS LV+EN +MRQQL + P    D SCES V +               RDASNP+GLL++AEETL EFLSKATGTA+DWVQM GMKPGPDS+GIVA+S  C GVAARACGLV+L+PTK+ EILKD PSWFRDCR L+V ++IP GNGGT+EL+Y Q
Sbjct:   41 RVYADCPKPTSSRRQQLLRECPILANIEPKQIKVWFQNRRCRDKQRKESSRLQAVNRKLTAMNKLLMEENERLQKQVSQLVHENAHMRQQLQNTPLAN-DTSCESNVTT----------PQNPLRDASNPSGLLSIAEETLTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRPSWFRDCRNLEVFTMIPAGNGGTVELVYTQ 261          
BLAST of FC920667 vs. ExPASy Swiss-Prot
Match: HOX29_ORYSJ (Homeobox-leucine zipper protein HOX29 OS=Oryza sativa subsp. japonica GN=HOX29 PE=2 SV=2)

HSP 1 Score: 316.235 bits (809), Expect = 1.044e-85
Identity = 158/250 (63.20%), Postives = 191/250 (76.40%), Query Frame = 2
Query:    2 RVYSECPQPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGY-------MRQQLHSAP-----------ATTTDNSCESVVMSGXXXXXXXXXXXXXXRDASNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQ 697
            R+Y ECP+PSSLRRQQL+RECP L+N++PKQIKVWFQNRRCREKQRKE+SRLQ +NRKL+AMNKLLMEENDRLQKQVS LVY++G        M +++ + P           AT TD SCESVV SG                 ++PAGL+++AEETL EFLSKATGTAV+W+QM GMKPGPDSIGI+A+S  C+GVAARACGLV ++P K+AEILKD P W RDCR +DV++V+P G  GTIEL+YMQ
Sbjct:   26 RLYYECPKPSSLRRQQLVRECPALANVDPKQIKVWFQNRRCREKQRKESSRLQALNRKLTAMNKLLMEENDRLQKQVSQLVYDHGRHGVAAAGMMRRVPAFPPQAAAAAGHQLATATDTSCESVVTSGHHHQQQQHNVVQPPPRDASPAGLMSIAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPAKVAEILKDRPLWLRDCRSMDVVNVLPAGANGTIELLYMQ 275          
BLAST of FC920667 vs. ExPASy Swiss-Prot
Match: HOX29_ORYSI (Homeobox-leucine zipper protein HOX29 OS=Oryza sativa subsp. indica GN=HOX29 PE=2 SV=2)

HSP 1 Score: 316.235 bits (809), Expect = 1.044e-85
Identity = 158/250 (63.20%), Postives = 191/250 (76.40%), Query Frame = 2
Query:    2 RVYSECPQPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGY-------MRQQLHSAP-----------ATTTDNSCESVVMSGXXXXXXXXXXXXXXRDASNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQ 697
            R+Y ECP+PSSLRRQQL+RECP L+N++PKQIKVWFQNRRCREKQRKE+SRLQ +NRKL+AMNKLLMEENDRLQKQVS LVY++G        M +++ + P           AT TD SCESVV SG                 ++PAGL+++AEETL EFLSKATGTAV+W+QM GMKPGPDSIGI+A+S  C+GVAARACGLV ++P K+AEILKD P W RDCR +DV++V+P G  GTIEL+YMQ
Sbjct:   19 RLYYECPKPSSLRRQQLVRECPALANVDPKQIKVWFQNRRCREKQRKESSRLQALNRKLTAMNKLLMEENDRLQKQVSQLVYDHGRHGVAAAGMMRRVPAFPPQAAAAAGHQLATATDTSCESVVTSGHHHQQQQHNVVQPPPRDASPAGLMSIAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPAKVAEILKDRPLWLRDCRSMDVVNVLPAGANGTIELLYMQ 268          
The following BLAST results are available for this feature:
BLAST of FC920667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
HOX9_ORYSI1.152e-9273.28Homeobox-leucine zipper protein HOX9 OS=Oryza sati... [more]
HOX10_ORYSJ4.376e-9271.12Homeobox-leucine zipper protein HOX10 OS=Oryza sat... [more]
HOX10_ORYSI4.376e-9271.12Homeobox-leucine zipper protein HOX10 OS=Oryza sat... [more]
HOX29_ORYSJ1.044e-8563.20Homeobox-leucine zipper protein HOX29 OS=Oryza sat... [more]
HOX29_ORYSI1.044e-8563.20Homeobox-leucine zipper protein HOX29 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC32011E02EF RVDevelop1 Citrus clementina cDNA clone C32011E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920667 ID=FC920667; Name=FC920667; organism=Citrus clementina; type=EST; length=701bp
GAGGGTGTACTCTGAATGCCCTCAGCCTAGCTCTTTGAGAAGGCAACAGC
TCATTAGGGAGTGCCCTATTCTTTCTAATATTGAGCCCAAACAGATCAAA
GTTTGGTTTCAAAACCGCAGATGTCGCGAAAAGCAGAGAAAGGAAGCTTC
CCGACTTCAGACGGTGAATCGAAAGCTGAGTGCCATGAACAAGCTGTTGA
TGGAAGAGAATGACCGTCTGCAGAAGCAGGTCTCGCATTTAGTCTATGAA
AACGGATACATGCGACAGCAACTGCATAGTGCACCTGCAACGACCACAGA
CAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAGCACCAACAACAGCAAA
ACCCAACACCTCAGCATCCCCAAAGGGATGCTAGCAACCCAGCTGGTCTT
CTCGCAGTAGCTGAGGAGACCCTGGCAGAGTTCCTCTCCAAGGCTACTGG
AACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATT
CTATTGGTATTGTTGCTGTTTCCCGCAACTGTAGTGGAGTAGCAGCACGT
GCTTGCGGTCTCGTGAGTCTAGATCCCACAAAGATCGCTGAAATTCTCAA
AGATTGTCCATCTTGGTTTCGTGACTGTCGCTGCCTGGATGTCTTGAGCG
TGATTCCTACTGGAAATGGAGGGACAATTGAACTTATTTACATGCAGACC
T
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