FC920680

Overview
NameFC920680
Unique NameFC920680
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13706 contig Ccv1_Contig13706:54..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_DROME (Eukaryotic translation initiation factor 2 subunit 3 OS=Drosophila melanogaster GN=Su(var)3-9 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.583e-68
Identity = 132/173 (76.30%), Postives = 147/173 (84.97%), Query Frame = 3
Query:  171 KGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENC--RMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIMRL 683
            + L +QDLS LDV+KL PLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKC++ +CPRP  + +  S K+D+  C      NC    +L+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NESCPQP TSEHLAA+EIM+L
Sbjct:   12 RNLQKQDLSNLDVSKLTPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPASFVSDASSKDDSLPCT---RLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKL 181          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_DICDI (Eukaryotic translation initiation factor 2 subunit 3 OS=Dictyostelium discoideum GN=eif2s3 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.418e-66
Identity = 126/173 (72.83%), Postives = 143/173 (82.66%), Query Frame = 3
Query:  165 SRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIMRL 683
            ++  L  QD+  L+V +L PL+P VISRQATINIGTIGHVAHGKSTVVKAISGV TVRF +E +RNITIKLGYANAKIYKC++ +C RP CYK+  S  EDNP C+ PG    RM LLRHVSFVDCPGHD+LMATMLNGAA+MD ALLLIA NESCPQP TSEH+AA+EIM L
Sbjct:    5 NKPNLSVQDVKLLNVNELTPLTPNVISRQATINIGTIGHVAHGKSTVVKAISGVLTVRFTSEFKRNITIKLGYANAKIYKCDNPQCERPGCYKSARSNTEDNPQCERPGCGG-RMTLLRHVSFVDCPGHDVLMATMLNGAAVMDAALLLIAGNESCPQPQTSEHIAAIEIMNL 176          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_ENCCU (Eukaryotic translation initiation factor 2 subunit gamma OS=Encephalitozoon cuniculi GN=ECU01_0700 PE=3 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.278e-55
Identity = 106/150 (70.67%), Postives = 122/150 (81.33%), Query Frame = 3
Query:  234 EVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIMRL 683
            E++ +QAT+NIGTIGHVAHGKST+VKAISG+ T++FK ELERNITIKLGYANAKIYKC D +C RP CY+++GS   D   C   G     +KL+RHVSFVDCPGHD+LMATMLNG AIMD  LLLIAANE CPQP T+EHL AVEIM L
Sbjct:    6 EIMKKQATLNIGTIGHVAHGKSTIVKAISGISTIKFKAELERNITIKLGYANAKIYKC-DSKCVRPNCYQSFGSSSPDRLSCKKCG---GTLKLVRHVSFVDCPGHDVLMATMLNGTAIMDAVLLLIAANEPCPQPQTTEHLFAVEIMDL 151          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_AERPE (Translation initiation factor 2 subunit gamma OS=Aeropyrum pernix GN=eif2g PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.437e-34
Identity = 72/144 (50.00%), Postives = 97/144 (67.36%), Query Frame = 3
Query:  246 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            RQ  +NIG +GHV HGK+T+V+A++GV T+R   E+ R +TIKLGYA+ ++++CE    P               P+C+          L R VS+VD PGH+ILMATML+GAA+MDGALL++AANE CPQP T EHL A+EI+
Sbjct:    7 RQPEVNIGVVGHVDHGKTTLVQALTGVWTMRHSEEIRRGMTIKLGYADGEVWECEGCGFPERF---------SPEPVCECD--PQASASLRRRVSYVDAPGHEILMATMLSGAALMDGALLVVAANEPCPQPQTKEHLVALEII 139          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_METTH (Translation initiation factor 2 subunit gamma OS=Methanobacterium thermoautotrophicum GN=eif2g PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.211e-33
Identity = 75/146 (51.37%), Postives = 98/146 (67.12%), Query Frame = 3
Query:  240 ISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            +  Q+ INIG +GHV HGK+T+ KA+SGV T     E +R I+I+LGYA+    KC   +C  PMCY           +C+  G E    +LLR VSFVD PGH+ LMATML+GAA+MDGA+L+IAANE CPQP T EHL A++++
Sbjct:    1 MKNQSEINIGLVGHVDHGKTTLTKALSGVWTDTHSEETKRGISIRLGYADITFRKCP--QCEAPMCYTTA-------EICERCGTET---ELLRKVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDVI 134          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_METAC (Translation initiation factor 2 subunit gamma OS=Methanosarcina acetivorans GN=eif2g PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.066e-33
Identity = 78/156 (50.00%), Postives = 97/156 (62.18%), Query Frame = 3
Query:  216 LHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRH--VSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            LH         Q  +NIG +GHV HGK+T+VKA+SGV T     E++R I+I+LGYA++   KC   +CP P CY            C      NC  K   H  VSFVD PGH+ LMATML+GAAIMDGA+L+IAANE CPQP T EHL A++I+
Sbjct:   27 LHSTGGNYNLSQPCVNIGMVGHVDHGKTTLVKALSGVWTDTHSEEVKRGISIRLGYADSPFMKCP--KCPAPQCYTV-------EKTCP-----NCGEKTEEHRIVSFVDAPGHETLMATMLSGAAIMDGAVLVIAANEECPQPQTKEHLMALDII 168          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_ARCFU (Translation initiation factor 2 subunit gamma OS=Archaeoglobus fulgidus GN=eif2g PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.066e-33
Identity = 75/140 (53.57%), Postives = 97/140 (69.29%), Query Frame = 3
Query:  258 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            +NIG +GHV HGK+T+V A+SGV T R   EL+R I+IKLGYA+A   KC +  C  P  Y           +C + G E    ++LR VSFVD PGH++LMATML+GAAIMDGA+L+IAANE CP+P T EHL A++I+
Sbjct:   26 VNIGLVGHVDHGKTTLVAALSGVWTDRHSEELKRGISIKLGYADATFRKCPE--CEPPEAYTV-------EEICPIHGVET---EILRTVSFVDSPGHEMLMATMLSGAAIMDGAVLVIAANEKCPRPQTKEHLMALQII 153          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_METMA (Translation initiation factor 2 subunit gamma OS=Methanosarcina mazei GN=eif2g PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.603e-33
Identity = 75/145 (51.72%), Postives = 95/145 (65.52%), Query Frame = 3
Query:  249 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRH--VSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            Q  +NIG +GHV HGK+T+V+A+SGV T     E++R I+I+LGYA++   KC   +CP P CY            C      NC  K   H  VSFVD PGH+ LMATML+GAAIMDGA+L+IAANE CPQP T EHL A++I+
Sbjct:   26 QPCVNIGMVGHVDHGKTTLVRALSGVWTDTHSEEVKRGISIRLGYADSPFMKCP--KCPEPQCYTV-------EKTCP-----NCGEKTEEHRTVSFVDAPGHETLMATMLSGAAIMDGAVLVIAANEDCPQPQTKEHLMALDII 156          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_THEVO (Translation initiation factor 2 subunit gamma OS=Thermoplasma volcanium GN=eif2g PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.896e-32
Identity = 74/143 (51.75%), Postives = 95/143 (66.43%), Query Frame = 3
Query:  249 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            Q T+NIG +GHV HGKST+  A++GV+T     E++R I+IKLGYA+  +YKC D             SG   NP       ENC ++  R +S VD PGH+ LMATML+G+A+M+GALL+IAANE CPQP T EHL A+EIM
Sbjct:    9 QPTVNIGMVGHVDHGKSTLTLALTGVKTDTHSEEIKRGISIKLGYADTPVYKCYD------------ASG---NPYYTRQPSENCELE--RVISIVDAPGHETLMATMLSGSALMNGALLVIAANEHCPQPQTREHLTALEIM 134          
BLAST of FC920680 vs. ExPASy Swiss-Prot
Match: IF2G_METMP (Translation initiation factor 2 subunit gamma OS=Methanococcus maripaludis GN=eif2g PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.089e-32
Identity = 71/145 (48.97%), Postives = 100/145 (68.97%), Query Frame = 3
Query:  243 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPPTSEHLAAVEIM 677
            S Q+ +NIG +GHV HGK+++ + ++GV T     EL+R I+I+LGYA+ +I KCE   C  P CY     GK+    CD  G    +++ LR +SFVD PGH+ LMATML+GA++MDGA+L+IAA+E CPQP T EHL A++ +
Sbjct:    4 SNQSEVNIGMVGHVDHGKTSLTRKLTGVWTDTHSEELKRGISIRLGYADCEIKKCET--CDEPECYTV---GKK----CDSCGG---KLQTLRKISFVDAPGHETLMATMLSGASLMDGAILVIAASEECPQPQTKEHLMALDAL 136          
The following BLAST results are available for this feature:
BLAST of FC920680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
IF2G_DROME2.583e-6876.30Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_DICDI1.418e-6672.83Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_ENCCU4.278e-5570.67Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_AERPE5.437e-3450.00Translation initiation factor 2 subunit gamma OS=A... [more]
IF2G_METTH1.211e-3351.37Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_METAC2.066e-3350.00Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_ARCFU2.066e-3353.57Translation initiation factor 2 subunit gamma OS=A... [more]
IF2G_METMA4.603e-3351.72Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_THEVO3.896e-3251.75Translation initiation factor 2 subunit gamma OS=T... [more]
IF2G_METMP5.089e-3248.97Translation initiation factor 2 subunit gamma OS=M... [more]

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Properties
Property NameValue
Genbank descriptionC32011F07EF RVDevelop1 Citrus clementina cDNA clone C32011F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920680 ID=FC920680; Name=FC920680; organism=Citrus clementina; type=EST; length=701bp
GCTCTCACAATCAATATAGCGGCAAACCTCAGTCAAATCTCGGTCTCGCA
GTCGTTCTCCGGCCGCAACTTGCTCTGCATTCAATCAGTTTTACGGGCTT
GAACATTACTAGTGGCAATACAGACAATAAGGAGAGGGGTATTTTCAAAG
AAACAGGCAAGATGTCACGGAAGGGTTTGATGGAACAGGACTTGAGTAAG
TTGGATGTAACTAAGTTGCATCCTCTTTCTCCTGAAGTCATTTCTCGCCA
GGCTACTATTAATATTGGAACTATCGGTCATGTGGCCCATGGCAAATCAA
CTGTTGTGAAGGCAATATCTGGTGTTCAGACTGTTCGTTTTAAGAATGAA
TTAGAGCGTAACATTACTATCAAGCTTGGATATGCAAATGCCAAGATATA
CAAATGTGAAGATGATCGTTGCCCACGACCAATGTGCTATAAGGCATATG
GAAGTGGGAAAGAAGATAATCCTCTGTGCGATGTGCCTGGTTTTGAGAAC
TGCAGGATGAAATTGCTTAGGCATGTCTCTTTTGTTGATTGCCCGGGTCA
TGATATTCTTATGGCTACAATGCTTAATGGAGCAGCAATTATGGATGGAG
CATTGCTTCTCATAGCAGCCAATGAAAGTTGCCCGCAACCACCAACATCG
GAGCACTTGGCAGCTGTTGAAATCATGCGTCTCCACATATAATATTCTTC
A
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