FC920683

Overview
NameFC920683
Unique NameFC920683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10346 contig Ccv1_Contig10346:13..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 37/92 (40.22%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  436 ITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALL 711
            ITGEIP+ I  +  L  LDL  N LSG +P +I    +L +LN+++N + G +P S+++L+ L  LD+ +N ++G IP S+G L  ++R +L
Sbjct:  479 ITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLIL 570          

HSP 2 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 39/110 (35.45%), Postives = 63/110 (57.27%), Query Frame = 1
Query:  358 YMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRL 687
            Y+TG +   + +L  L+   L     I+G IP  I +   L  L L+ N+++G+IP  IG L  L+ L++++NN+SG +P  I+N   L  L+L NN + G +P S+  L
Sbjct:  430 YLTGSLPAGLFQLRNLTKLLLIS-NAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSL 538          

HSP 3 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 36/118 (30.51%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  358 YMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALL 711
            Y++  +   + K++ L S        ++G+IP  I +   L++L L   K+SG +P  +G+L +L  L++    +SG IP  + N S L++L L +N +SG +P  +G+L+ + + LL
Sbjct:  189 YLSENLPLELGKISTLESIRAGGNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNLEKMLL 306          

HSP 4 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 43/114 (37.72%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  361 MTGYISPAVCKLTRLSSFTLADWKG-ITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMS 699
            ++G I P +  L  L+ F    W+  + G IP  ++    L+ LDL  N L+G +P  + +L  L  L +  N ISG IP  I N +SL+ L L NNRI+G IP  +G L+ +S
Sbjct:  383 ISGLIPPEIGLLKELNIFL--GWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLS 494          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 59/183 (32.24%), Postives = 92/183 (50.27%), Query Frame = 1
Query:  172 ALLAFKAALH--EPYLGIFNSWTGNDCCH-NWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP--GSVGRLRMMSRA 705
            AL+A +++L   +    I  SW        +W+ V+C+ E + V  ++L   +             ++G + P + +L  L    L +   ITGEIP  +  +  L  LDL  N +SG IP  +G+L +L  L + +N++SG IP S+  L  L  LD+ NNR+SG IP  GS  +   MS A
Sbjct:   30 ALIALRSSLSSGDHTNNILQSWNATHVTPCSWFHVTCNTE-NSVTRLDLGSAN-------------LSGELVPQLAQLPNLQYLELFN-NNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLGKLRFLRLYNNSLSGEIPRSLTALP-LDVLDISNNRLSGDIPVNGSFSQFTSMSFA 196          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: HSL2_ARATH (LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  376 SPAVCKLTRLSSFT--LADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMS 699
            SP    L  LS+ T        + GEIP  I ++  L  LDL  N L+G+IP  IGRL  +  + + DN +SG +P SI NL+ L + D+  N ++G +P  +  L+++S
Sbjct:  210 SPIPSTLGNLSNLTDLRLTHSNLVGEIPDSIMNLVLLENLDLAMNSLTGEIPESIGRLESVYQIELYDNRLSGKLPESIGNLTELRNFDVSQNNLTGELPEKIAALQLIS 319          

HSP 2 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 1
Query:  364 TGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRM 693
            +G I   +C L  L    L+      G IP CI+ +  L  +++  N L G+IP  +     L  LN+++N + G IPP + +L  L +LDL NN+++G IP  + RL++
Sbjct:  472 SGVIPVKLCDLRDLRVIDLSR-NSFLGSIPSCINKLKNLERVEMQENMLDGEIPSSVSSCTELTELNLSNNRLRGGIPPELGDLPVLNYLDLSNNQLTGEIPAELLRLKL 580          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 62/212 (29.25%), Postives = 102/212 (48.11%), Query Frame = 1
Query:   73 MGGCVSFYTAQLLLIFLAXXXXXXNCCPPSERAALLAFKAAL--HEPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSR 702
            M  C S++   LL+ FL+          P +  ALL+F+  +   +  +G++     + C  NW GV+CD +T RV  ++L                 + G + P + KL +L    L +   +   IP  + +   L  + L  N ++G IP +IG L  L  L++++NN++GAIP S+  L  L   ++ NN + G IP S G L  +SR
Sbjct:    6 MKRCCSWF---LLISFLSALTNENEAISP-DGEALLSFRNGVLASDGVIGLWRPEDPDPC--NWKGVTCDAKTKRVIALSLTYHK-------------LRGPLPPELGKLDQLRLLMLHN-NALYQSIPASLGNCTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASLGQLKRLTKFNVSNNFLVGKIP-SDGLLARLSR 196          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: CLV1_ARATH (Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 61/200 (30.50%), Postives = 98/200 (49.00%), Query Frame = 1
Query:  112 LIFLAXXXXXXNCCPPSERAALLAFKAALHEPYLGIFNSW---TGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGN-KLSGDIPPDIGR-LHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMM 696
            L+FL        C   ++   LL  K+++  P     + W   +  D   ++ GVSCD +  RV  +N+   S  P+F          G ISP +  LT L + TLA     TGE+P  + S+  L++L++  N  L+G  P +I + +  L VL+  +NN +G +PP ++ L  L +L    N  SG IP S G ++ +
Sbjct:   10 LLFLHLYLFFSPCFAYTDMEVLLNLKSSMIGPKGHGLHDWIHSSSPDAHCSFSGVSCDDDA-RVISLNV---SFTPLF----------GTISPEIGMLTHLVNLTLAA-NNFTGELPLEMKSLTSLKVLNISNNGNLTGTFPGEILKAMVDLEVLDTYNNNFNGKLPPEMSELKKLKYLSFGGNFFSGEIPESYGDIQSL 194          

HSP 2 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 53/186 (28.49%), Postives = 88/186 (47.31%), Query Frame = 1
Query:  172 ALLAFKAALHEPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAH------RTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALL 711
            A L+    L E Y+G +NS+TG       +G     E   +A   L GE    +    H          +TG+I P +  L  L S  L+    +TGEIP+   ++  + +++L  N L G IP  IG L +L V  + +NN +  +P ++    +L+ LD+ +N ++G IP  + R   +   +L
Sbjct:  210 AFLSRLKNLREMYIGYYNSYTGG--VPPEFGGLTKLEILDMASCTLTGEIPTSLSNLKHLHTLFLHINNLTGHIPPELSGLVSLKSLDLSI-NQLTGEIPQSFINLGNITLINLFRNNLYGQIPEAIGELPKLEVFEVWENNFTLQLPANLGRNGNLIKLDVSDNHLTGLIPKDLCRGEKLEMLIL 392          

HSP 3 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  439 TGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLR 690
            +GEIP  I + P L+ L L  N+  G+IP +I  L  L+ +N + NNI+G IP SI+  S+L+ +DL  NRI+G IP  +  ++
Sbjct:  469 SGEIPPAIGNFPNLQTLFLDRNRFRGNIPREIFELKHLSRINTSANNITGGIPDSISRCSTLISVDLSRNRINGEIPKGINNVK 552          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: Y5516_ARATH (Probable receptor kinase At5g05160 OS=Arabidopsis thaliana GN=At5g05160 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 64/202 (31.68%), Postives = 93/202 (46.04%), Query Frame = 1
Query:   88 SFYTAQLLLIFLAXXXXXXNCCPPSERAALLAFKAAL-HEPYLGIFNSWTGN-DCCHNWYGVSCDQE--THRVADINLRGESEDPIFQRAHRTGYMTGYISPAVC-KLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIP----PDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPI 666
            +F  A    + LA      +    S+  ALL F A++ H P L    +W  N   C +W G++CD+   T RV  + L G               + G I PA   KL  L   +L     + G +P  I S+P L  L L  N  SG++     P I +  +L VL+++ N++SG IP  + NLS +  L L+NN   GPI
Sbjct:    7 AFVAASFFFLLLAATAVLVSADLASDEQALLNFAASVPHPPKL----NWNKNLSLCSSWIGITCDESNPTSRVVAVRLPGVG-------------LYGSIPPATLGKLDALKVLSLRS-NSLFGTLPSDILSLPSLEYLYLQHNNFSGELTTNSLPSISK--QLVVLDLSYNSLSGNIPSGLRNLSQITVLYLQNNSFDGPI 188          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 44/118 (37.29%), Postives = 66/118 (55.93%), Query Frame = 1
Query:  361 MTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPG-SVGRLRMMSRALL 711
            ++G +S ++ +LT L +  L +   +TG IP  +  +  L  LDL GN+ SG+IP  +G L  L  L ++ N +SG +P  +A LS L  LDL  N +SGP P  S    R++  A L
Sbjct:   91 LSGILSTSIGELTHLHTLLLQN-NQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLGFLTHLNYLRLSRNLLSGQVPHLVAGLSGLSFLDLSFNNLSGPTPNISAKDYRIVGNAFL 207          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 58/177 (32.77%), Postives = 85/177 (48.02%), Query Frame = 1
Query:  154 PPSERAALLAFKAALHE--PYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSV 678
            P ++  AL A + +L      L  +N    N C   W  V CD +   V  + L   +              +G +S  V  L  L + TL    GITGEIP    ++  L  LDL  N+L+G IP  IG L +L  L ++ N ++G IP S+  L +L++L L +N +SG IP S+
Sbjct:   27 PDAQGDALFALRISLRALPNQLSDWNQNQVNPC--TWSQVICDDKNF-VTSLTLSDMN-------------FSGTLSSRVGILENLKTLTLKG-NGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQFLTLSRNKLNGTIPESLTGLPNLLNLLLDSNSLSGQIPQSL 186          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: Y3288_ARATH (Probable inactive receptor kinase At3g02880 OS=Arabidopsis thaliana GN=At3g02880 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 54/170 (31.76%), Postives = 86/170 (50.59%), Query Frame = 1
Query:  160 SERAALLAFKAALHEPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP 669
            S+R ALLA + ++    L ++N    + C  NW+GV CD    RV  + L G            +G         +  LT+L + +L  +  ++G IP   S++  LR L L GN  SG+IP  +  L  +  +N+ +N  SG IP ++ + + L+ L L  N++SGPIP
Sbjct:   28 SDRRALLAVRNSVRGRPL-LWNMSASSPC--NWHGVHCD--AGRVTALRLPG------------SGLFGSLPIGGIGNLTQLKTLSLR-FNSLSGPIPSDFSNLVLLRYLYLQGNAFSGEIPSLLFTLPSIIRINLGENKFSGRIPDNVNSATRLVTLYLERNQLSGPIP 179          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: RLK90_ARATH (Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 57/170 (33.53%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  160 SERAALLAFKAALHEPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVC-KLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPI 666
            ++++ALL+F++A+    L +++    + C  NW GV CD    RV  + L GE+             ++G+I   +   LT+L + +L    G+TG +P  + S   LR L L GN+ SG+IP  +  L  L  LN+A+N  SG I     NL+ L  L L NN++SG +
Sbjct:   33 ADKSALLSFRSAVGGRTL-LWDVKQTSPC--NWTGVLCDGG--RVTALRLPGET-------------LSGHIPEGIFGNLTQLRTLSLR-LNGLTGSLPLDLGSCSDLRRLYLQGNRFSGEIPEVLFSLSNLVRLNLAENEFSGEISSGFKNLTRLKTLYLENNKLSGSL 183          
The following BLAST results are available for this feature:
BLAST of FC920683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
RCH1_ARATH5.400e-1340.22LRR receptor-like serine/threonine-protein kinase ... [more]
SERK5_ARATH9.211e-1332.24Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
HSL2_ARATH9.211e-1336.36LRR receptor-like serine/threonine-protein kinase ... [more]
FEI2_ARATH9.211e-1329.25LRR receptor-like serine/threonine-protein kinase ... [more]
CLV1_ARATH9.211e-1330.50Receptor protein kinase CLAVATA1 OS=Arabidopsis th... [more]
Y5516_ARATH1.203e-1231.68Probable receptor kinase At5g05160 OS=Arabidopsis ... [more]
Y5457_ARATH1.203e-1237.29Probable LRR receptor-like serine/threonine-protei... [more]
Y5129_ARATH1.203e-1232.77Probable LRR receptor-like serine/threonine-protei... [more]
Y3288_ARATH1.203e-1231.76Probable inactive receptor kinase At3g02880 OS=Ara... [more]
RLK90_ARATH1.203e-1233.53Probable inactive receptor kinase RLK902 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC32011G01EF RVDevelop1 Citrus clementina cDNA clone C32011G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920683 ID=FC920683; Name=FC920683; organism=Citrus clementina; type=EST; length=713bp
GCGTAAACTCAATCCACTTCTCTTCCCAACGTAAACCCAAAACTCATCGT
TTCGGATCAAGCAAAAACCAACATGGGTGGCTGTGTCTCGTTTTACACTG
CGCAGCTTCTTCTAATCTTCCTCGCCGTTAGTTCTTCCGTCGTTAATTGC
TGCCCGCCGTCAGAGCGGGCAGCACTCTTAGCCTTCAAAGCTGCCCTCCA
CGAGCCTTACTTGGGCATCTTCAACTCCTGGACGGGCAACGACTGTTGCC
ACAACTGGTACGGTGTTAGCTGTGACCAGGAAACTCACCGGGTCGCTGAC
ATTAACCTACGTGGCGAGTCTGAGGATCCGATATTCCAGCGGGCCCACCG
AACCGGGTACATGACCGGGTATATCTCACCCGCTGTGTGTAAACTCACGC
GTCTCTCCAGTTTCACGCTCGCCGACTGGAAAGGCATCACCGGGGAAATC
CCACGTTGCATTTCTTCAATTCCTTTTCTCCGCATTCTTGATTTAATCGG
AAATAAGTTATCGGGCGACATTCCCCCAGATATCGGCCGGCTTCACAGAC
TCGCTGTCTTAAATATCGCCGATAACAACATATCGGGTGCGATTCCCCCT
TCCATTGCTAATCTTTCCAGCTTGATGCATCTTGACTTGCGTAACAACAG
AATTTCGGGCCCGATTCCGGGAAGTGTCGGGCGACTCCGAATGATGAGCC
GGGCTTTGCTGTC
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