FC920683

Overview
NameFC920683
Unique NameFC920683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10346 contig Ccv1_Contig10346:13..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: BRI1_ARATH (Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  436 ITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP 669
            ++G IP+ I S+P+L IL+L  N +SG IP ++G L  L +L+++ N + G IP +++ L+ L  +DL NN +SGPIP
Sbjct:  666 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 743          

HSP 2 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 35/87 (40.23%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  418 LADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSV 678
            + D+  +TGEIP  +S+   L  + L  N+L+G+IP  IGRL  LA+L +++N+ SG IP  + +  SL+ LDL  N  +G IP ++
Sbjct:  494 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 580          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: Y4374_ARATH (Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 54/190 (28.42%), Postives = 88/190 (46.32%), Query Frame = 1
Query:  109 LLIFLAXXXXXXNCCPPSERAALLAFKAALHEPYLGIFNSWTG-NDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSFTLADWKG--ITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP 669
            L + L       N  P  ++ ALL F   + +P   +  +W   +  C+ W GV+C+Q+  R+  + L G               + G I P    ++RLS+  +   +   I+GE P+    +  L  L L  N LSG +P D      L  +N+++N  +G IP S++ L  +  L+L NN +SG IP
Sbjct:   11 LCLSLCLIIYGANSDPLEDKRALLEFLTIM-QPTRSL--NWNETSQVCNIWTGVTCNQDGSRIIAVRLPGVG-------------LNGQIPPNT--ISRLSALRVLSLRSNLISGEFPKDFVELKDLAFLYLQDNNLSGPLPLDFSVWKNLTSVNLSNNGFNGTIPSSLSRLKRIQSLNLANNTLSGDIP 182          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 47/154 (30.52%), Postives = 82/154 (53.25%), Query Frame = 1
Query:  253 NWYGVSCDQETHRVADIN-----LRGESEDPIFQRAH------RTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVG 681
            NW+G++CD ++  VA +N     + G+    I +          T   +G I   +   T+L++  L++  G + +IP  + S+  L +L L  N L+G++P  + R+ +L VL +  NN++G IP SI +   L+ L +  N+ SG IP S+G
Sbjct:   65 NWFGITCD-DSKNVASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSE-NGFSDKIPDTLDSLKRLEVLYLYINFLTGELPESLFRIPKLQVLYLDYNNLTGPIPQSIGDAKELVELSMYANQFSGNIPESIG 216          

HSP 2 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 32/85 (37.65%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  442 GEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMM 696
            G +P  + +   L  L ++   LSG IP  +G L  L +LN+++N +SG+IP  + N SSL  L L +N++ G IP ++G+LR +
Sbjct:  281 GGVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKL 365          

HSP 3 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 42/106 (39.62%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  364 TGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRI-LDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSV 678
            +G I   + +L +LS+  +A      GEIP  I  I  L   LDL GN L+G+IP  +G L +L  LNI++NN++G++   +  L+SL+H+D+ NN+ +GPIP ++
Sbjct:  615 SGGIPQFLPELKKLSTLQIAR-NAFGGEIPSSIGLIEDLIYDLDLSGNGLTGEIPAKLGDLIKLTRLNISNNNLTGSL-SVLKGLTSLLHVDVSNNQFTGPIPDNL 718          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 53/159 (33.33%), Postives = 75/159 (47.17%), Query Frame = 1
Query:  223 NSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMS 699
            NS T N  C   +  S      RV +I L+  S             + G   P    LTRL    L+    + G IP  +S IP L IL +IGN+LSG  PP +G +  L  +N+  N  +G +P ++ NL SL  L L  N  +G IP S+  L+ ++
Sbjct:   72 NSPTSNITCDCTFNAS---SVCRVTNIQLKSFS-------------LPGIFPPEFGNLTRLREIDLSR-NFLNGTIPTTLSQIP-LEILSVIGNRLSGPFPPQLGDITTLTDVNLETNLFTGPLPRNLGNLRSLKELLLSANNFTGQIPESLSNLKNLT 212          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: Y5720_ARATH (Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 62/194 (31.96%), Postives = 90/194 (46.39%), Query Frame = 1
Query:   91 FYTAQLLLIFLAXXXXXXNCCPPSERAALLAFKAALHEPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPA-VCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP 669
            F+   LL +         N   PS+  ALL+FK+        +++     D C  W GV C Q   R+  + L G               + GY S A + +L +L   +L +   + G IP  +S +  L+ L L  N+ SG  PP I  LHRL +L+I+ NN SG+IP  I  L  L  L+L  NR +G +P
Sbjct:   10 FFFFILLRVSAGAEPNYFNSLLPSDAVALLSFKSTADLDNKLLYSLTERYDYCQ-WRGVKCAQG--RIVRLVLSGVG-------------LRGYFSSATLSRLDQLRVLSLEN-NSLFGPIPD-LSHLVNLKSLFLSRNQFSGAFPPSILSLHRLMILSISHNNFSGSIPSEINALDRLTSLNLDFNRFNGTLP 185          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: Y1124_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  436 ITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMS 699
            + GE+P  IS+   L  LD+ GN L G I   +  L  + +L++  N ++G+IPP + NLS +  LDL  N +SGPIP S+G L  ++
Sbjct:  368 LIGEVPEDISNCRVLLELDVSGNDLEGKISKKLLNLTNIKILDLHRNRLNGSIPPELGNLSKVQFLDLSQNSLSGPIPSSLGSLNTLT 455          

HSP 2 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  361 MTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRL 687
            + G I  ++ K+  LS   L +   I G IPR I S+ FL++L+L    L G++P DI     L  L+++ N++ G I   + NL+++  LDL  NR++G IP  +G L
Sbjct:  320 LNGSIPGSIGKMESLSVIRLGN-NSIDGVIPRDIGSLEFLQVLNLHNLNLIGEVPEDISNCRVLLELDVSGNDLEGKISKKLLNLTNIKILDLHRNRLNGSIPPELGNL 427          

HSP 3 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  436 ITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMM 696
            +TG IP  +     L++LDL  NKL+G IP  IG++  L+V+ + +N+I G IP  I +L  L  L+L N  + G +P  +   R++
Sbjct:  296 LTGRIPTGVMGCKSLKLLDLESNKLNGSIPGSIGKMESLSVIRLGNNSIDGVIPRDIGSLEFLQVLNLHNLNLIGEVPEDISNCRVL 382          

HSP 4 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 29/78 (37.18%), Postives = 55/78 (70.51%), Query Frame = 1
Query:  436 ITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP 669
            + G+I + + ++  ++ILDL  N+L+G IPP++G L ++  L+++ N++SG IP S+ +L++L H ++  N +SG IP
Sbjct:  392 LEGKISKKLLNLTNIKILDLHRNRLNGSIPPELGNLSKVQFLDLSQNSLSGPIPSSLGSLNTLTHFNVSYNNLSGVIP 469          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: BRL1_ARATH (Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  361 MTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSV 678
            +TG I   VC         + +   +TG IP  IS    +  + L  N+L+G IP  IG L +LA+L + +N++SG +P  + N  SL+ LDL +N ++G +PG +
Sbjct:  462 LTGTIPEGVCVKGGNLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGEL 567          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 54/175 (30.86%), Postives = 86/175 (49.14%), Query Frame = 1
Query:  160 SERAALLAFKAALH--EPYLGIFNSWTGN---DCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP 669
            +E  AL   K +L   +P   +  SW       C   W+ V+C+ E ++V  ++L                 ++G + P + +L  L    L     ITGEIP  +  +  L  LDL  N +SG IP  +G+L +L  L + +N++SG IP ++ ++  L  LD+ NNR+SG IP
Sbjct:   31 AEGDALTQLKNSLSSGDPANNVLQSWDATLVTPC--TWFHVTCNPE-NKVTRVDLGNAK-------------LSGKLVPELGQLLNLQYLELYS-NNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGKLRFLRLNNNSLSGEIPMTLTSV-QLQVLDISNNRLSGDIP 187          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 54/194 (27.84%), Postives = 83/194 (42.78%), Query Frame = 1
Query:  160 SERAALLAFKAALHEPYLGIFNSWTGNDCCH-NWYGVSCDQ----ETHRVADINLRGESEDPIFQRAHRTGYM---TGYISPAVCKLTRLSSFTLADWKG--ITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALL 711
            S+ AALL+           I  SW  +D    +W GV CD+    +T  ++   + GE    I    H    +    G+      +L   S     D      TG IP  + ++  LR L L  N L G  P  +  +  L  +    N ++G+IP +I N+S L  L L +N+ SGP+P S+G +  +    L
Sbjct:   26 SDGAALLSLTRHWTSIPSDITQSWNASDSTPCSWLGVECDRRQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSGPVPSSLGNITTLQELYL 219          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: PSYR1_ARATH (Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  436 ITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP 669
            +TG IP  +  +  L IL+L+GN  SG IP ++  L  L  L++++NN+SG IP S+  L  L + ++ NN +SGPIP
Sbjct:  593 LTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLTGLHFLSYFNVANNTLSGPIP 670          
The following BLAST results are available for this feature:
BLAST of FC920683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
BRI1_ARATH1.571e-1243.59Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidops... [more]
Y4374_ARATH2.052e-1228.42Probable inactive receptor kinase At4g23740 OS=Ara... [more]
PEPR1_ARATH2.680e-1230.52Leucine-rich repeat receptor-like protein kinase P... [more]
Y5343_ARATH3.500e-1233.33Probable LRR receptor-like serine/threonine-protei... [more]
Y5720_ARATH4.571e-1231.96Probable inactive receptor kinase At5g67200 OS=Ara... [more]
Y1124_ARATH4.571e-1239.77Probable LRR receptor-like serine/threonine-protei... [more]
BRL1_ARATH5.970e-1234.91Serine/threonine-protein kinase BRI1-like 1 OS=Ara... [more]
SERK4_ARATH7.798e-1230.86Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
RPK1_IPONI1.018e-1127.84Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
PSYR1_ARATH1.330e-1142.31Tyrosine-sulfated glycopeptide receptor 1 OS=Arabi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32011G01EF RVDevelop1 Citrus clementina cDNA clone C32011G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920683 ID=FC920683; Name=FC920683; organism=Citrus clementina; type=EST; length=713bp
GCGTAAACTCAATCCACTTCTCTTCCCAACGTAAACCCAAAACTCATCGT
TTCGGATCAAGCAAAAACCAACATGGGTGGCTGTGTCTCGTTTTACACTG
CGCAGCTTCTTCTAATCTTCCTCGCCGTTAGTTCTTCCGTCGTTAATTGC
TGCCCGCCGTCAGAGCGGGCAGCACTCTTAGCCTTCAAAGCTGCCCTCCA
CGAGCCTTACTTGGGCATCTTCAACTCCTGGACGGGCAACGACTGTTGCC
ACAACTGGTACGGTGTTAGCTGTGACCAGGAAACTCACCGGGTCGCTGAC
ATTAACCTACGTGGCGAGTCTGAGGATCCGATATTCCAGCGGGCCCACCG
AACCGGGTACATGACCGGGTATATCTCACCCGCTGTGTGTAAACTCACGC
GTCTCTCCAGTTTCACGCTCGCCGACTGGAAAGGCATCACCGGGGAAATC
CCACGTTGCATTTCTTCAATTCCTTTTCTCCGCATTCTTGATTTAATCGG
AAATAAGTTATCGGGCGACATTCCCCCAGATATCGGCCGGCTTCACAGAC
TCGCTGTCTTAAATATCGCCGATAACAACATATCGGGTGCGATTCCCCCT
TCCATTGCTAATCTTTCCAGCTTGATGCATCTTGACTTGCGTAACAACAG
AATTTCGGGCCCGATTCCGGGAAGTGTCGGGCGACTCCGAATGATGAGCC
GGGCTTTGCTGTC
back to top