FC920683

Overview
NameFC920683
Unique NameFC920683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10346 contig Ccv1_Contig10346:13..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: PII2_ARATH (Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 38/116 (32.76%), Postives = 60/116 (51.72%), Query Frame = 1
Query:  364 TGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALL 711
            +G +  ++C L RL     A      G IP C   +  L ILDL  N  SG +P   G L  L  L++++N + G +P  +  L +L  LDLRNNR SG +  ++  ++ ++  +L
Sbjct:  180 SGELPASICNLKRLKRLVFAG-NSFAGMIPNCFKGLKELLILDLSRNSFSGTLPTSFGDLVSLLKLDLSNNLLEGNLPQELGFLKNLTLLDLRNNRFSGGLSKNIENIQSLTELVL 294          

HSP 2 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 37/113 (32.74%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  361 MTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMS 699
            + G +   +  LT+L S  + +  G +GE+P  I ++  L+ L   GN  +G IP     L  L +L+++ N+ SG +P S  +L SL+ LDL NN + G +P  +G L+ ++
Sbjct:  155 LIGELPETIGNLTKLKSLVVLE-NGFSGELPASICNLKRLKRLVFAGNSFAGMIPNCFKGLKELLILDLSRNSFSGTLPTSFGDLVSLLKLDLSNNLLEGNLPQELGFLKNLT 266          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 1
Query:  361 MTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP---GSVGRLRMM 696
            ++G +   +  L+ L +  L    G TGEIP   S++  L++LD   N+LSG IP     L  L  L++  NN+SG +P  I  L  L  L L NN  +G +P   GS G+L  M
Sbjct:  261 LSGSLPQELGNLSNLETLFLFQ-NGFTGEIPESYSNLKSLKLLDFSSNQLSGSIPSGFSTLKNLTWLSLISNNLSGEVPEGIGELPELTTLFLWNNNFTGVLPHKLGSNGKLETM 374          

HSP 2 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  385 VCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVG 681
            + K   L  F+ A +  + GEIP  +    F RI +L GN L+G IP DIG   +L  LN++ N+++G IP  I+ L S+  +DL +N ++G IP   G
Sbjct:  485 IWKAPNLQIFS-ASFSNLIGEIPNYVGCKSFYRI-ELQGNSLNGTIPWDIGHCEKLLCLNLSQNHLNGIIPWEISTLPSIADVDLSHNLLTGTIPSDFG 581          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 58/203 (28.57%), Postives = 97/203 (47.78%), Query Frame = 1
Query:   64 KTNMGGCVSFYTAQLLLIFLAXXXXXXNCCPPSERAALLAFKAALH-EPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP 669
            KTN+G  V F+   L+ +              ++R AL+A +  +H  P L    + T   C   W GV C  E+ RV  + L G               ++G +  A+  LT+L + +   +  + G +P   +++  LR L L GN  SG+IP  +  L  +  +N+A NN  G IP ++ + + L  L L++N+++GPIP
Sbjct:    4 KTNLGLSVFFFFICLVSVTSDLE---------ADRRALIALRDGVHGRPLLW---NLTAPPC--TWGGVQC--ESGRVTALRLPGVG-------------LSGPLPIAIGNLTKLETLSFR-FNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIP 176          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: Y1848_ARATH (Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 55/171 (32.16%), Postives = 88/171 (51.46%), Query Frame = 1
Query:  160 SERAALLAFKAALHEPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVC-KLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP 669
            ++R ALL+ ++A+       +N    + C  NW GV C  E++RV  + L G +             ++G I   +   LT+L + +L     ++G +P+ +S+   LR L L GN+ SG+IP  +  L  L  LN+A N+ +G I     NL+ L  L L NN++SG IP
Sbjct:   35 ADRTALLSLRSAVGGRTFR-WNIKQTSPC--NWAGVKC--ESNRVTALRLPGVA-------------LSGDIPEGIFGNLTQLRTLSLR-LNALSGSLPKDLSTSSNLRHLYLQGNRFSGEIPEVLFSLSHLVRLNLASNSFTGEISSGFTNLTKLKTLFLENNQLSGSIP 186          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: IKU2_ARATH (Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  364 TGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSRALL 711
            TG    +  K   L    +++   ++G IP  I  +P L+ LDL  N   G++  DIG    L  L++++N  SG++P  I+  +SL+ ++LR N+ SG +P S G+L+ +S  +L
Sbjct:  377 TGQFPESYAKCKTLIRLRVSN-NSLSGMIPSGIWGLPNLQFLDLASNYFEGNLTGDIGNAKSLGSLDLSNNRFSGSLPFQISGANSLVSVNLRMNKFSGIVPESFGKLKELSSLIL 491          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: BRL3_ARATH (Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 34/106 (32.08%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  361 MTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSV 678
            +TG I  ++C         + +   +TG +P  IS    +  + L  N L+G+IP  IG+L +LA+L + +N+++G IP  + N  +L+ LDL +N ++G +PG +
Sbjct:  462 LTGGIPESICVDGGNLETLILNNNLLTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCKNLIWLDLNSNNLTGNLPGEL 567          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 54/173 (31.21%), Postives = 85/173 (49.13%), Query Frame = 1
Query:  160 SERAALLAFKAALHEPYLGIFNSWTGN---DCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIP 669
            +E  AL A K +L +P   +  SW       C   W+ V+C+ + + V  ++L   +             ++G +   + +L  L    L     ITG IP  + ++  L  LDL  N LSG IP  +GRL +L  L + +N++SG IP S+  + +L  LDL NN ++G IP
Sbjct:   27 AEGDALSALKNSLADPNK-VLQSWDATLVTPC--TWFHVTCNSD-NSVTRVDLGNAN-------------LSGQLVMQLGQLPNLQYLELYS-NNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIP 181          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: Y5020_ARATH (Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1
Query:  460 ISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSV 678
            ++S P + +LDL  N L+G +P DIG + ++ VLN+A+N +SG +P  +  LS L+ LDL NN   G IP  +
Sbjct:  464 LNSYPQMELLDLSTNSLTGMLPGDIGTMEKIKVLNLANNKLSGELPSDLNKLSGLLFLDLSNNTFKGQIPNKL 536          

HSP 2 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 54/183 (29.51%), Postives = 76/183 (41.53%), Query Frame = 1
Query:  145 NCCPPSERAALLAFKAALHEPYLGIFNSWTGND-------CCHNWYGVSCDQETHRVADINL--RGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPI 666
            N    +E  +LL F+  + +       SW+          C ++W G+SCD ET  +  INL  RG S +  F                +  LTRL + +L+     +G +   +  I  L+ LDL  N   G IP  I  L  L  LN++ N   G  P    NL  L  LDL  N I G +
Sbjct:   20 NAVTETELRSLLEFRKGIRDETSHQRISWSDTSSLTDPSTCPNDWPGISCDPETGSIIAINLDRRGLSGELKFS--------------TLSGLTRLRNLSLSG-NSFSGRVVPSLGGISSLQHLDLSDNGFYGPIPGRISELWSLNHLNLSSNKFEGGFPSGFRNLQQLRSLDLHKNEIWGDV 187          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 52/162 (32.10%), Postives = 74/162 (45.68%), Query Frame = 1
Query:  289 RVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISSIPFLRILDLIGNKLSG------------------------DIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGRLRMMSR 702
            RV +I LRG +             + G I P    LTRL+   L     ++G IP  +S IP L IL + GN+LSG                         +PP++G L  L  L I+ NNI+G IP S++NL +L +  +  N +SG IP  +G    + R
Sbjct:   89 RVTNIQLRGFN-------------LRGIIPPEFGNLTRLTEIDLV-LNFLSGTIPTTLSQIP-LEILAVTGNRLSGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPESLSNLKNLTNFRIDGNSLSGKIPDFIGNWTRLVR 235          
BLAST of FC920683 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 44/133 (33.08%), Postives = 67/133 (50.38%), Query Frame = 1
Query:  289 RVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSFTLADWKGITGEIPRCISS-IPFLRILDLIGNKLSGDIPPDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNNRISGPIPGSVGR 684
            ++  ++   E E+ I     ++  + G I  ++     L S  L+    ++G IP  I S +P+L  LDL GNKL G IP  I     L  L ++DN +SG+IP  ++ L  L  L L  N +SG IP  + R
Sbjct:   60 KLTGVSCWNEKENRIISLQLQSMQLAGEIPESLKLCRSLQSLDLSG-NDLSGSIPSQICSWLPYLVTLDLSGNKLGGSIPTQIVECKFLNALILSDNKLSGSIPSQLSRLDRLRRLSLAGNDLSGTIPSELAR 191          
The following BLAST results are available for this feature:
BLAST of FC920683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
PII2_ARATH1.330e-1132.76Piriformospora indica-insensitive protein 2 OS=Ara... [more]
Y5148_ARATH1.737e-1136.52Probable leucine-rich repeat receptor-like protein... [more]
Y5659_ARATH2.269e-1128.57Probable inactive receptor kinase At5g16590 OS=Ara... [more]
Y1848_ARATH2.963e-1132.16Probable inactive receptor kinase At1g48480 OS=Ara... [more]
IKU2_ARATH3.870e-1132.76Receptor-like protein kinase HAIKU2 OS=Arabidopsis... [more]
BRL3_ARATH3.870e-1132.08Receptor-like protein kinase BRI1-like 3 OS=Arabid... [more]
BAK1_ARATH3.870e-1131.21BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
Y5020_ARATH5.054e-1142.47Probable inactive receptor kinase At5g10020 OS=Ara... [more]
Y5344_ARATH6.601e-1132.10Probable LRR receptor-like serine/threonine-protei... [more]
Y1719_ARATH6.601e-1133.08Probable inactive receptor kinase At1g27190 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32011G01EF RVDevelop1 Citrus clementina cDNA clone C32011G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920683 ID=FC920683; Name=FC920683; organism=Citrus clementina; type=EST; length=713bp
GCGTAAACTCAATCCACTTCTCTTCCCAACGTAAACCCAAAACTCATCGT
TTCGGATCAAGCAAAAACCAACATGGGTGGCTGTGTCTCGTTTTACACTG
CGCAGCTTCTTCTAATCTTCCTCGCCGTTAGTTCTTCCGTCGTTAATTGC
TGCCCGCCGTCAGAGCGGGCAGCACTCTTAGCCTTCAAAGCTGCCCTCCA
CGAGCCTTACTTGGGCATCTTCAACTCCTGGACGGGCAACGACTGTTGCC
ACAACTGGTACGGTGTTAGCTGTGACCAGGAAACTCACCGGGTCGCTGAC
ATTAACCTACGTGGCGAGTCTGAGGATCCGATATTCCAGCGGGCCCACCG
AACCGGGTACATGACCGGGTATATCTCACCCGCTGTGTGTAAACTCACGC
GTCTCTCCAGTTTCACGCTCGCCGACTGGAAAGGCATCACCGGGGAAATC
CCACGTTGCATTTCTTCAATTCCTTTTCTCCGCATTCTTGATTTAATCGG
AAATAAGTTATCGGGCGACATTCCCCCAGATATCGGCCGGCTTCACAGAC
TCGCTGTCTTAAATATCGCCGATAACAACATATCGGGTGCGATTCCCCCT
TCCATTGCTAATCTTTCCAGCTTGATGCATCTTGACTTGCGTAACAACAG
AATTTCGGGCCCGATTCCGGGAAGTGTCGGGCGACTCCGAATGATGAGCC
GGGCTTTGCTGTC
back to top