FC920692

Overview
NameFC920692
Unique NameFC920692
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14096 contig Ccv1_Contig14096:726..1387. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920692 vs. ExPASy Swiss-Prot
Match: PROD_DROME (Proline dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=slgA PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17
Identity = 64/212 (30.19%), Postives = 102/212 (48.11%), Query Frame = 3
Query:   60 LNNFP---LFSDCSPLYHTLQKPEPLTLQ-----------EENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKI-----ADGSG---AVVLATHNVESGQLAAAKATDLGI 629
            L+ FP   +  + S L  T + P+P T Q           EE   ++  +RL  + +   + +V + VDAE T+ QPAI  +T       NK  K IV+NT Q YL++    +    E A++     G KLVRGAYM  E   A SLG+  P++ + + T   Y+   S  L +I      D       +++A+HN ++ + A  +  ++GI
Sbjct:  380 LHLFPWSGIVDEDSQLSDTFRVPDPQTGQMRRLISQIPPKEEEMFRNMIRRLNTIVKAAADLDVRIMVDAEQTYFQPAISRITLEMMRKYNK-DKAIVFNTYQCYLRETFREVNTDLEQAKRQNFYFGAKLVRGAYMDQERDRAKSLGYPDPVNPTFEATTDMYHRTLSECLRRIKLMKDCDDDARKIGIMVASHNEDTVRFAIQQMKEIGI 590          
BLAST of FC920692 vs. ExPASy Swiss-Prot
Match: PROD_SCHPO (Probable proline dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=SPCC70.03c PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.501e-14
Identity = 66/200 (33.00%), Postives = 96/200 (48.00%), Query Frame = 3
Query:   60 LNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSE-------SKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIAD--GSGAVVLATHN----VESGQLAAAKATD 620
            LN +P+ S C+ L H L+ PE L+  E +EL+   +   KLCQ   E  +PL +DAE T+ Q  +  +T +     NK    IV+NT Q YLK +++ +    +     G  MG KLVRGAY++SE       +K      FDS +   I           +   + IA   G   +++A+HN     ES  LA  K  D
Sbjct:  215 LNQYPVESACNYLEH-LKSPE-LSTYEVSELKKFWEYADKLCQFAKEKQIPLFIDAEQTYFQDCMHAVTVDLMRKYNKE-VAIVHNTYQLYLKKSRKIMDDHIKKCVAEGWLMGAKLVRGAYLNSEPRFLIHDTKAETDKDFDSAVEAIIAAAAKFAPGDPASASDPIASRKGKWGIMVASHNKKTMFESVNLAETKKVD 411          
The following BLAST results are available for this feature:
BLAST of FC920692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PROD_DROME7.033e-1730.19Proline dehydrogenase, mitochondrial OS=Drosophila... [more]
PROD_SCHPO2.501e-1433.00Probable proline dehydrogenase, mitochondrial OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC32011G12EF RVDevelop1 Citrus clementina cDNA clone C32011G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920692 ID=FC920692; Name=FC920692; organism=Citrus clementina; type=EST; length=662bp
GAGTGAGCGATTTGCTTATATGGCAACAAAGAGACCCTTCATTTAATCTC
CCGTGGAAGCTCAACAACTTCCCTCTTTTCTCGGATTGCAGCCCCTTATA
TCACACGTTGCAAAAACCTGAACCGTTGACATTACAAGAAGAAAATGAGC
TCCAATCAGCCCACCAAAGGCTACAAAAGTTGTGCCAAGAATGCTTAGAG
GCCAATGTGCCACTAACAGTCGATGCAGAGGACACATTTGTGCAGCCTGC
TATTGATTACTTGACATACAATGCAGCACTCTCGAACAACAAAGCCGGTA
AGCCGATCGTGTACAACACAATTCAGGCTTACTTGAAGGATGCCAAGGAA
AGATTGTTTCTTGCAACAGAAGCTGCTGAGAAAATGGGAGTGCCTATGGG
GTTTAAGCTTGTCAGGGGAGCTTATATGTCTAGTGAAAGTAAACTAGCTG
CGTCCTTGGGATTTGACTCTCCTATTCACAATAGCATTCAAGAGACTCAT
GCCTGTTACAACGATTGTGCTTCTTACATGCTGGAGAAGATTGCTGACGG
CTCCGGTGCTGTTGTTCTTGCTACCCATAATGTGGAATCAGGGCAACTAG
CCGCAGCAAAGGCGACTGATCTGGGGATCAAGGGGACCAGAAGCTGGAAT
TTGCACAGCTTT
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