FC920695

Overview
NameFC920695
Unique NameFC920695
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920695_ssr8 microsatellite FC920695_ssr8:8..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920695 vs. ExPASy Swiss-Prot
Match: CYSE_SHIFL (Serine acetyltransferase OS=Shigella flexneri GN=cysE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.202e-18
Identity = 51/137 (37.23%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  291 LWLKMQDEARSDVEEEPVLSSYYFASILSHKSLEXXXXXXXXXXXXXXXXQSGTLFELFMGVIVEDQEIIKAVKADLIAVKERDPACISYVHCLLNFKGFLACQAHRIAHRLWLQGKKVLALLIQNRVSEGFSVDIH 701
            +W  ++ EAR+  + EP+L+S+Y A++L H++L                  +  + E+       D E+I +   D+ AV+ RDPA   Y   LL  KGF A QA+RI H LW QG++ LA+ +QN+VS  F VDIH
Sbjct:    9 VWNNIKAEARTLADCEPMLASFYHATLLKHENLGSALSYMLANKLSSPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIH 145          
BLAST of FC920695 vs. ExPASy Swiss-Prot
Match: CYSE_ECOLI (Serine acetyltransferase OS=Escherichia coli (strain K12) GN=cysE PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.202e-18
Identity = 51/137 (37.23%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  291 LWLKMQDEARSDVEEEPVLSSYYFASILSHKSLEXXXXXXXXXXXXXXXXQSGTLFELFMGVIVEDQEIIKAVKADLIAVKERDPACISYVHCLLNFKGFLACQAHRIAHRLWLQGKKVLALLIQNRVSEGFSVDIH 701
            +W  ++ EAR+  + EP+L+S+Y A++L H++L                  +  + E+       D E+I +   D+ AV+ RDPA   Y   LL  KGF A QA+RI H LW QG++ LA+ +QN+VS  F VDIH
Sbjct:    9 VWNNIKAEARTLADCEPMLASFYHATLLKHENLGSALSYMLANKLSSPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIH 145          
BLAST of FC920695 vs. ExPASy Swiss-Prot
Match: CYSE_ECOL6 (Serine acetyltransferase OS=Escherichia coli O6 GN=cysE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.202e-18
Identity = 51/137 (37.23%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  291 LWLKMQDEARSDVEEEPVLSSYYFASILSHKSLEXXXXXXXXXXXXXXXXQSGTLFELFMGVIVEDQEIIKAVKADLIAVKERDPACISYVHCLLNFKGFLACQAHRIAHRLWLQGKKVLALLIQNRVSEGFSVDIH 701
            +W  ++ EAR+  + EP+L+S+Y A++L H++L                  +  + E+       D E+I +   D+ AV+ RDPA   Y   LL  KGF A QA+RI H LW QG++ LA+ +QN+VS  F VDIH
Sbjct:    9 VWNNIKAEARTLADCEPMLASFYHATLLKHENLGSALSYMLANKLSSPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIH 145          
BLAST of FC920695 vs. ExPASy Swiss-Prot
Match: CYSE_ECO57 (Serine acetyltransferase OS=Escherichia coli O157:H7 GN=cysE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.202e-18
Identity = 51/137 (37.23%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  291 LWLKMQDEARSDVEEEPVLSSYYFASILSHKSLEXXXXXXXXXXXXXXXXQSGTLFELFMGVIVEDQEIIKAVKADLIAVKERDPACISYVHCLLNFKGFLACQAHRIAHRLWLQGKKVLALLIQNRVSEGFSVDIH 701
            +W  ++ EAR+  + EP+L+S+Y A++L H++L                  +  + E+       D E+I +   D+ AV+ RDPA   Y   LL  KGF A QA+RI H LW QG++ LA+ +QN+VS  F VDIH
Sbjct:    9 VWNNIKAEARTLADCEPMLASFYHATLLKHENLGSALSYMLANKLSSPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIH 145          
BLAST of FC920695 vs. ExPASy Swiss-Prot
Match: CYSE_SALTY (Serine acetyltransferase OS=Salmonella typhimurium GN=cysE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  291 LWLKMQDEARSDVEEEPVLSSYYFASILSHKSLEXXXXXXXXXXXXXXXXQSGTLFELFMGVIVEDQEIIKAVKADLIAVKERDPACISYVHCLLNFKGFLACQAHRIAHRLWLQGKKVLALLIQNRVSEGFSVDIH 701
            +W  ++ EAR+  + EP+L+S+Y A++L H++L                  +  + E+       D E+I +   D+ AV+ RDPA   Y   LL  KGF A QA+RI H LW +G++ LA+ +QN+VS  F VDIH
Sbjct:    9 VWKNIKAEARALADCEPMLASFYHATLLKHENLGSALSYMLANKLASPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNKGRRALAIFLQNQVSVSFQVDIH 145          
BLAST of FC920695 vs. ExPASy Swiss-Prot
Match: CYSE_BUCAI (Serine acetyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=cysE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  291 LWLKMQDEARSDVEEEPVLSSYYFASILSHKSLEXXXXXXXXXXXXXXXXQSGTLFELFMGVIVEDQEIIKAVKADLIAVKERDPACISYVHCLLNFKGFLACQAHRIAHRLWLQGKKVLALLIQNRVSEGFSVDIH 701
            +W K+  +    +++EP+LS +Y +SIL H+S                      +  +F  V + D+ I+  +  D+ AV +RDPA   Y+  LL  KGF A +A+RI+H LW  GKK L+L +Q+R+S  FSVDIH
Sbjct:    9 IWNKILYDVSFLLKKEPILSDFYQSSILQHQSFTSSLSYILSNKLSTSMISEKKIQGIFDDVYLNDRSILNFIVQDIKAVLKRDPAVNDYLTPLLYLKGFHALEAYRISHYLWNTGKKSLSLYLQSRISSEFSVDIH 145          
BLAST of FC920695 vs. ExPASy Swiss-Prot
Match: CYSE_HAEIN (Serine acetyltransferase OS=Haemophilus influenzae GN=cysE PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  291 LWLKMQDEARSDVEEEPVLSSYYFASILSHKSLEXXXXXXXXXXXXXXXXQSGTLFELFMGVIVEDQEIIKAVKADLIAVKERDPACISYVHCLLNFKGFLACQAHRIAHRLWLQGKKVLALLIQNRVSEGFSVDIH 701
            +W  ++ EA+   E EP+L+S++ ++IL H++L                  + +L E+       +  II     D+ AV+ RDPA   +   LL  KGF A Q++RI H LW Q +K LAL +QN++S  F VDIH
Sbjct:    5 VWQHIRQEAKELAENEPMLASFFHSTILKHQNLGGALSYLLANKLANPIMPAISLREIIEEAYQSNPSIIDCAACDIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSLALYLQNQISVAFDVDIH 141          
BLAST of FC920695 vs. ExPASy Swiss-Prot
Match: CYSE_BUCAP (Serine acetyltransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=cysE PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  291 LWLKMQDEARSDVEEEPVLSSYYFASILSHKSLEXXXXXXXXXXXXXXXXQSGTLFELFMGVIVEDQEIIKAVKADLIAVKERDPACISYVHCLLNFKGFLACQAHRIAHRLWLQGKKVLALLIQNRVSEGFSVDIH 701
            LW  ++ +A+  +++EP+LS++Y  SIL+HK L                     ++ +F  +   +  II +V  D+ A  +RDP    Y+  LL  KGF A +A+R++H LW   +  L+  +Q+R+S  FSVDIH
Sbjct:    9 LWNMIKHKAQKILKKEPILSNFYQKSILNHKKLSHSLSCILSDKLSTSMISEKDIYNIFNKIYANNISIINSVVKDIKAASQRDPVVKHYLTPLLYLKGFHALEAYRLSHYLWNIKRYELSAYLQSRISTVFSVDIH 145          
BLAST of FC920695 vs. ExPASy Swiss-Prot
Match: SAT_SCHPO (Putative serine acetyltransferase OS=Schizosaccharomyces pombe GN=SPAC1039.08 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 44/138 (31.88%), Postives = 69/138 (50.00%), Query Frame = 3
Query:  291 LWLKMQDEARSDVEEEPVLSSYYFASILSHKSLEXXXXXXXXXXXXXXXXQSGTLFELFMGVI-VEDQEIIKAVKADLIAVKERDPACISYVHCLLNFKGFLACQAHRIAHRLWLQGKKVLALLIQNRVSEGFSVDIH 701
            +W K++ EA    E  P L+      ILS K+L                  S ++   F  ++ + D++II++   DL  +   +PAC   +   L+F+GF A Q +RIAH LW +G K  A+L+QN  +  + VDIH
Sbjct:   16 IWPKLRKEAEKQCEVNPWLAKDLARKILSKKTLRESLSCVLALPLDHVTGSSESMENWFYSILGLNDEKIIRSAMIDLDRLYTTNPACPDLISAFLSFRGFHALQLYRIAHGLWSEGDKTSAVLVQNWTAVAYGVDIH 153          
The following BLAST results are available for this feature:
BLAST of FC920695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CYSE_SHIFL3.202e-1837.23Serine acetyltransferase OS=Shigella flexneri GN=c... [more]
CYSE_ECOLI3.202e-1837.23Serine acetyltransferase OS=Escherichia coli (stra... [more]
CYSE_ECOL63.202e-1837.23Serine acetyltransferase OS=Escherichia coli O6 GN... [more]
CYSE_ECO573.202e-1837.23Serine acetyltransferase OS=Escherichia coli O157:... [more]
CYSE_SALTY4.182e-1836.50Serine acetyltransferase OS=Salmonella typhimurium... [more]
CYSE_BUCAI7.134e-1836.50Serine acetyltransferase OS=Buchnera aphidicola su... [more]
CYSE_HAEIN1.757e-1635.04Serine acetyltransferase OS=Haemophilus influenzae... [more]
CYSE_BUCAP8.720e-1632.85Serine acetyltransferase OS=Buchnera aphidicola su... [more]
SAT_SCHPO4.785e-1431.88Putative serine acetyltransferase OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionC32011H03EF RVDevelop1 Citrus clementina cDNA clone C32011H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920695 ID=FC920695; Name=FC920695; organism=Citrus clementina; type=EST; length=703bp
GAGAACATCTCCTCTCCTCTCCAGCTTCTTCACGAACATCACCAATTTTC
TCTCTATCCAAACACCACCGCGAAAAAACTTCCACAGCCGTTATGGCTAC
TTGTATTGATACTTCTCAAATTTCCCAGGATCCAAGCAGGTCTCAAAATG
ATGATCATGCATACAGGTACGCAAAACACTGCCGGCCCAGTTTTTCCGAT
CGTGTTTCTTGCGTGCCCTTTAATAGAAACCAGGAACAAGCCATACACAC
GCGTTCAAATATTGATGACGGCGATGATGCTGATGTTGATCTATGGCTCA
AAATGCAAGACGAAGCAAGATCGGACGTTGAGGAAGAACCTGTCCTGTCA
AGCTACTATTTCGCTTCAATCTTGTCGCATAAGTCCCTTGAAAGCGCTCT
GGCAAAACATCTTTCAATTAAATTAAGCAGTTTGAGCCTTCAAAGCGGTA
CGTTGTTTGAACTTTTCATGGGGGTGATTGTAGAGGATCAAGAAATTATC
AAAGCCGTGAAGGCTGATTTGATAGCCGTTAAAGAAAGAGACCCTGCGTG
CATAAGTTATGTGCATTGTCTTTTAAATTTCAAAGGGTTTTTAGCTTGCC
AGGCACATAGGATAGCACATCGGCTGTGGTTACAAGGGAAGAAAGTTTTG
GCTCTGTTAATACAAAACAGGGTGTCCGAAGGTTTCTCCGTTGATATTCA
TCC
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