FC920925

Overview
NameFC920925
Unique NameFC920925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14215 contig Ccv1_Contig14215:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_XANOR (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae GN=lldD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 54/161 (33.54%), Postives = 80/161 (49.69%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  EHTL+ NV     +  R R+L ++S + LST +    ++ P+ + P     +    GEV  ARAAA+      LS  S   IEEVA +     ++QLYV K R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQARLPPFLFHYIDGGAYAEHTLRRNVSDLADVALRQRVLRNMSDLRLSTELFGETLAMPVALGPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIERPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_XANOP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 54/161 (33.54%), Postives = 80/161 (49.69%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  EHTL+ NV     +  R R+L ++S + LST +    ++ P+ + P     +    GEV  ARAAA+      LS  S   IEEVA +     ++QLYV K R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQARLPPFLFHYIDGGAYAEHTLRRNVSDLADVALRQRVLRNMSDLRLSTELFGETLAMPVALGPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIERPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_XANOM (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 54/161 (33.54%), Postives = 80/161 (49.69%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  EHTL+ NV     +  R R+L ++S + LST +    ++ P+ + P     +    GEV  ARAAA+      LS  S   IEEVA +     ++QLYV K R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQARLPPFLFHYIDGGAYAEHTLRRNVSDLADVALRQRVLRNMSDLRLSTELFGETLAMPVALGPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIERPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP7 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 55/161 (34.16%), Postives = 80/161 (49.69%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  EHTL+ NVE    +  R RIL ++S + L TT+ + K++ P  +AP     +    GEV  A AA        LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRILPPFLFHYIDGGAYAEHTLRRNVEDLSDVALRQRILRNMSDLSLETTLFNEKLAMPTALAPVGLCGMYARRGEVQAAGAADDKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP3 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae (strain 342) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 55/161 (34.16%), Postives = 80/161 (49.69%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  EHTL+ NVE    +  R RIL ++S + L TT+ + K++ P  +AP     +    GEV  A AA        LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRILPPFLFHYIDGGAYAEHTLRRNVEDLSDVALRQRILRNMSDLSLETTLFNEKLAMPTALAPVGLCGMYARRGEVQAAGAADDKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_AZOC5 (L-lactate dehydrogenase [cytochrome] OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 52/161 (32.30%), Postives = 80/161 (49.69%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            N+++  A+  LP   + +  GGA  E+TL+ NVE    I  R ++L +V+ + L T +   K++ P+ +AP     +    GEV  A+AA +      LS  S   IEEV +      ++QLYV K R      ++RA+  G   L+ T D P  G R  D
Sbjct:    7 NDYRAAAKSRLPPFLFHYVDGGAYAEYTLRRNVEDLSHIALRQQVLRNVADLSLETELFGQKLTMPVALAPVGLTGMLARRGEVQAAKAAQAKGVPFTLSTVSVCPIEEVQSQCAKPIWFQLYVLKDRGFMRNALERAQAAGINTLIFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_STRMK (L-lactate dehydrogenase [cytochrome] OS=Stenotrophomonas maltophilia (strain K279a) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 56/160 (35.00%), Postives = 77/160 (48.12%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +++  A   LP   + +  GGA  EHTLK NV     I  R RIL ++S + L T +    ++ P+ +AP     +    GEV  ARAA S      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    8 DYRAAAERRLPPFLFHYIDGGAYAEHTLKRNVSDLSDIALRQRILRNMSDLSLETELFGETLAMPVALAPVGLTGMYARRGEVQAARAADSRGIPFTLSTVSVCPIEEVAPAIQRPMWFQLYVLRDRGFMRNALERAQAAGVTTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_STRM5 (L-lactate dehydrogenase [cytochrome] OS=Stenotrophomonas maltophilia (strain R551-3) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 55/160 (34.38%), Postives = 78/160 (48.75%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +++  A+  LP   + +  GGA  EHTLK NV     I  R R+L ++S + L T +    ++ P+ +AP     +    GEV  ARAA S      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    8 DYRAAAQRRLPPFLFHYIDGGAYAEHTLKRNVSDLSDIALRQRVLRNMSDLSLETELFGETLAMPVALAPVGLTGMYARRGEVQAARAADSRGIPFTLSTVSVCPIEEVAPAIQRPMWFQLYVLRDRGFMRNALERAQAAGVTTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_BARHE (L-lactate dehydrogenase [cytochrome] OS=Bartonella henselae GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 53/160 (33.12%), Postives = 79/160 (49.38%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++ A+  LP   + +  GGA  E T++ N      +  R RIL  V  +DLST + D  +  PII+AP     +    GEV  ARAA +      LS  S   I EV  +  +  ++QLYV K R     +++R+  +G + LV T D P  G R  D
Sbjct:    8 DYRKAAKRRLPPFLFHYIDGGAYAEETMRRNYADLQALALRQRILRGVGEVDLSTKLFDQTLDLPIILAPVGLTGMYARRGEVQAARAAVAKGIPFTLSSVSVCPIAEVQKAVGSAFWFQLYVLKDRGFMRDVLERSWASGVRTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_ACTPJ (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 53/161 (32.92%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            N+++E AR  +P   + +  GG+  E TL+ NV     +  R R+L D+S++D    +   K++ P ++AP     +    GEV  A+AA +      LS  S   IEEV A+     ++QLYV K R     +++RA+  G   LV T D P  G R  D
Sbjct:    7 NDYREAARRRVPPFMFHYADGGSFSERTLERNVTDLADLALRQRVLKDMSQLDTEIELFGEKLAMPAVLAPVGACGMYARRGEVQAAQAAENKGIPFTLSTVSICPIEEVTAAIKRPMWFQLYVLKDRGFMKHVLERAKAAGCSTLVFTVDMPTPGARYRD 167          
The following BLAST results are available for this feature:
BLAST of FC920925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_XANOR1.862e-1833.54L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOP1.862e-1833.54L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOM1.862e-1833.54L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_KLEP71.862e-1834.16L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]
LLDD_KLEP31.862e-1834.16L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]
LLDD_AZOC51.862e-1832.30L-lactate dehydrogenase [cytochrome] OS=Azorhizobi... [more]
LLDD_STRMK3.176e-1835.00L-lactate dehydrogenase [cytochrome] OS=Stenotroph... [more]
LLDD_STRM53.176e-1834.38L-lactate dehydrogenase [cytochrome] OS=Stenotroph... [more]
LLDD_BARHE3.176e-1833.13L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD_ACTPJ3.176e-1832.92L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]

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Properties
Property NameValue
Genbank descriptionC32014H05EF RVDevelop1 Citrus clementina cDNA clone C32014H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920925 ID=FC920925; Name=FC920925; organism=Citrus clementina; type=EST; length=698bp
ACTAATCCTTTATACGCTTCTTGACTTTAACTCTGCCCCCGACTCACTGT
TGTAATCTGCTTCACGATCGACCTTCATCAGTTGAAATTTTTAGTCATTC
GGGTTCATTTCTTTACAAAATTCTATTGTTTAAGTTTGATTAATAGTTAT
TCGAATCGGTTTCACATGGCAGCTGAACCTGTTAATTTGAATGAGTTCCA
AGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTACGCTG
GTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCTTTCAT
AGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCAGAATAGATTT
ATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATTATCATTGCTC
CAACGGCTTTCCATAAGCTTGCAAACCCTGAAGGAGAAGTAGCCACAGCC
AGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCTTCACATCTAG
CAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTTCTATC
AATTATATGTATTCAAGAAACGAGATATAACAGCTACTCTAGTGCAGAGA
GCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCTGATACTCCAAG
ACTTGGTAGAAGGGAGGCAGATATAAAGAACAAATGATTACACGCCGT
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